PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.009G011200.1

Common Name

PHAVU_009G011200g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

Nin-like

Protein Properties

Length: 915aa MW: 101503 Da PI: 6.0331

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.009G011200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.2	3.8e-29	599	650	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++ Phvul.009G011200.1 599 AEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKV 650 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.803	589	670	IPR003035	RWP-RK domain
Pfam	PF02042	6.5E-25	602	650	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.43E-23	819	905	No hit	No description
PROSITE profile	PS51745	25.11	820	903	IPR000270	PB1 domain
SMART	SM00666	4.9E-22	820	903	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.9E-22	820	900	No hit	No description
Pfam	PF00564	1.3E-18	821	901	IPR000270	PB1 domain
CDD	cd06407	1.10E-41	821	901	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 915 aa Download sequence Send to blast
MMRDGDVTSS SATMMEASPP DGTTTSMDFD YMGELFYDGC WFEASVDGSD FLLQSPSYSN 60 PLFDPSFSWP ALETNHNESQ GAAFGTQEEG HNNNVVAARG GGGGGQQFQP ETISIEGASD 120 GVRRWRFAPT PSPAPGPSIM EKLVRALMRI KDYNRNKNML IQIWVPVHRG GRPILAANDI 180 LFSLDSRSMN LAKYREISVR YEFSAEEGEV KELVPAEEGD SKELVLGLPG RVFRDKVPEW 240 TPDVRFFRSD EYPRLDHAQE YDVSGSLAVP IFEQGSKMCL GVIEVVMTTQ QINYGPELES 300 VCKALEAVDL RSSKQLSIQN VKACNRSYEA VLPEIQQVLR SACEMHKLPL AQTWIPCVQQ 360 GKEGCRHSED NYLFCISPAE HACYVGDPKI RSFHESCTEH HLLKGEGVAG GAFMTNQPCF 420 SDDITSLSKK DYPLSHHARL FGLRAAVAIR LRSIYNSTDD FVLEFFLPVD CNDSEEQRKM 480 LTSLSIIIQR VCRSLRVISD KELVEAKLSI DEGISLADSG FDRTAICEEL QHKGTVASLD 540 TEEKLSETTG RKFSDPMRQQ KSPILKGNLD CVRESSTSVE GNLSSVGMSK MGDRRRAKAE 600 KTITLQVLRQ YFAGSLKDAA KNIGVCTTTL KRICRQHGIK RWPSRKIKKV GHSLQKLQLV 660 IDSVQGASGA FQIDSFYSNF PDLASPNLSG TTLFSTFNQT DNPNSISTQP DPGALSPEGT 720 SKSPSSSCGQ SSISSHSYSS MSELQQLHTT NIAGKKDSTT AGEDSAVVAL KRIRSEAELK 780 SLNQDKAKLL PRSLSQETLG EHPKNQYQRP LLKTSSKVDA HRVKVTYGDE KTRFRMPKNW 840 GYEDLLQEIG GRFNVSDMKK FDVKYLDDDC EWVLLTCDAD LEECIDVCQS SESGTIKLSL 900 QTSTHSMRSS LEFR*

Sequence ? help Back to Top

Protein Sequence Length: 915 aa Download sequence Send to blast

MMRDGDVTSS SATMMEASPP DGTTTSMDFD YMGELFYDGC WFEASVDGSD FLLQSPSYSN  60
PLFDPSFSWP ALETNHNESQ GAAFGTQEEG HNNNVVAARG GGGGGQQFQP ETISIEGASD  120
GVRRWRFAPT PSPAPGPSIM EKLVRALMRI KDYNRNKNML IQIWVPVHRG GRPILAANDI  180
LFSLDSRSMN LAKYREISVR YEFSAEEGEV KELVPAEEGD SKELVLGLPG RVFRDKVPEW  240
TPDVRFFRSD EYPRLDHAQE YDVSGSLAVP IFEQGSKMCL GVIEVVMTTQ QINYGPELES  300
VCKALEAVDL RSSKQLSIQN VKACNRSYEA VLPEIQQVLR SACEMHKLPL AQTWIPCVQQ  360
GKEGCRHSED NYLFCISPAE HACYVGDPKI RSFHESCTEH HLLKGEGVAG GAFMTNQPCF  420
SDDITSLSKK DYPLSHHARL FGLRAAVAIR LRSIYNSTDD FVLEFFLPVD CNDSEEQRKM  480
LTSLSIIIQR VCRSLRVISD KELVEAKLSI DEGISLADSG FDRTAICEEL QHKGTVASLD  540
TEEKLSETTG RKFSDPMRQQ KSPILKGNLD CVRESSTSVE GNLSSVGMSK MGDRRRAKAE  600
KTITLQVLRQ YFAGSLKDAA KNIGVCTTTL KRICRQHGIK RWPSRKIKKV GHSLQKLQLV  660
IDSVQGASGA FQIDSFYSNF PDLASPNLSG TTLFSTFNQT DNPNSISTQP DPGALSPEGT  720
SKSPSSSCGQ SSISSHSYSS MSELQQLHTT NIAGKKDSTT AGEDSAVVAL KRIRSEAELK  780
SLNQDKAKLL PRSLSQETLG EHPKNQYQRP LLKTSSKVDA HRVKVTYGDE KTRFRMPKNW  840
GYEDLLQEIG GRFNVSDMKK FDVKYLDDDC EWVLLTCDAD LEECIDVCQS SESGTIKLSL  900
QTSTHSMRSS LEFR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.009G011200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007136019.1	0.0	hypothetical protein PHAVU_009G011200g
TrEMBL	V7ATS8	0.0	V7ATS8_PHAVU; Uncharacterized protein
STRING	XP_007136019.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1237	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Phvul.009G011200.1
Entrez Gene	18618778