PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.009G012200.1

Common Name

PHAVU_009G012200g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

WOX

Protein Properties

Length: 217aa MW: 24625.9 Da PI: 6.3976

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.009G012200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69.7	3.5e-22	80	140	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+++++e+A +l +++e++V++WFqNrRa+ k+ Phvul.009G012200.1 80 RQRWTPTPLQLQILERIFDEgNGTPSKQKIKEIAIELgqhgQISETNVYNWFQNRRARSKR 140 89***************99************************************97 PP
2	Wus_type_Homeobox	99.3	2.8e-32	79	142	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G tP+k++i++i+ eL ++G+i+++NV++WFQNr+aR+++kq Phvul.009G012200.1 79 ARQRWTPTPLQLQILERIFDEGNGTPSKQKIKEIAIELGQHGQISETNVYNWFQNRRARSKRKQ 142 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.2E-18	76	143	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.418	76	141	IPR001356	Homeobox domain
SMART	SM00389	1.5E-16	78	145	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.55E-20	79	142	IPR009057	Homeodomain-like
CDD	cd00086	6.97E-16	80	142	No hit	No description
Pfam	PF00046	6.5E-20	80	140	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MEAEHHQEAS NTIGSLYVKV MTDEQMELLR QQISVYATIC EQLVEMHKAV TTQQDLAGLR 60 LGNLYCDSLM ACSGHKITAR QRWTPTPLQL QILERIFDEG NGTPSKQKIK EIAIELGQHG 120 QISETNVYNW FQNRRARSKR KQLAPASNVE PEADTEVESP REKKLRAESV QVIQPFENSS 180 SSPHRIKDMY IHSPDLGFEQ LMSKIEVAGC YSSYFL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	141	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.009G012200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	1e-140	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007136031.1	1e-163	hypothetical protein PHAVU_009G012200g
Swissprot	Q5QMM3	5e-78	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	V7ART8	1e-161	V7ART8_PHAVU; Uncharacterized protein
STRING	XP_007136031.1	1e-162	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	4e-72	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Phvul.009G012200.1
Entrez Gene	18618788

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]