PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G013200.1
Common NamePHAVU_009G013200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 250aa    MW: 27586.3 Da    PI: 4.4474
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G013200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.7e-183988255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         ykGVr++  +g+WvAeIr+p   + r +r +lg+f t  +Aa a++aa++kl+g
  Phvul.009G013200.1 39 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFETSHDAALAYDAAARKLYG 88
                        69****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.33E-213898No hitNo description
PfamPF008477.0E-133988IPR001471AP2/ERF domain
PROSITE profilePS5103222.3263996IPR001471AP2/ERF domain
SMARTSM003806.7E-3539102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-303997IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-213997IPR016177DNA-binding domain
PRINTSPR003672.1E-94051IPR001471AP2/ERF domain
PRINTSPR003672.1E-96278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MLKSGMKIDE KKQVKKTAQA SSRKGCMRGK GGPENASCTY KGVRQRTWGK WVAEIREPNR  60
GARLWLGTFE TSHDAALAYD AAARKLYGPD AKLNLPDLTV PPMKPPQCPP PHPDINTQTP  120
EMENLQQPLM QNNIDMATCS NFNFNPAVSM ASQEVGVTPI YTSDCIVSLP LDTNPEPIET  180
YTKPGGIEGE FCPSWETMNE SLPVFDDSIW AEAAMSLDFP LIAAETEIYT PENTLADVDM  240
WDPQAPWCM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-194096360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-194096663ATERF1
3gcc_A3e-194096663ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G013200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136043.10.0hypothetical protein PHAVU_009G013200g
TrEMBLV7AQU90.0V7AQU9_PHAVU; Uncharacterized protein
STRINGXP_007136043.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.15e-43ERF family protein