PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G023500.1
Common NamePHAVU_009G023500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 405aa    MW: 44638.1 Da    PI: 8.0195
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G023500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.2e-10212259455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Phvul.009G023500.1 212 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 259
                         8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.15E-17206276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.57E-10206263No hitNo description
PROSITE profilePS5088815.618208258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-17208276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-7212259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9214264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MLHCANASGN LAGDMTVLER QRARMKWQEE QGYFSGFNAV FSSSSSSSLH VQDSLMLAAD  60
SGCALGEVVA QAQAQAQTRS MNKPSLAGFD SSSSISRTFS CPPALVEPEP RPRPTDSSFG  120
KECLKKRKPD KLHNAKFVTE NDTKDKRIKV GADDEQSKIT GSPKSNTKTN SNKREAWADT  180
SNSKQNSKPS EVQNQKPDYI HVRARRGQAT DSHSLAERVR REKISERMKY LQDLVPGCNK  240
ITGKAGMLDE IINYVQSLQR QVEFLSMKLA AVNPRLEFSV DDLFEKEVFP TSAANFPNIG  300
MSSDLTNSAY LQFNSPQQMV SYGGLDTGIN PPCMGLKRSI SAHVSMPETY HHSSCFTQML  360
PSSAWEGDFQ NLCNLDFDQV RATSFPSHLS SGLVEAGNHL KMEM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G023500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1405841e-98BT140584.1 Medicago truncatula clone JCVI-FLMt-18N21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136166.10.0hypothetical protein PHAVU_009G023500g
TrEMBLV7ASA10.0V7ASA1_PHAVU; Uncharacterized protein
STRINGXP_007136166.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36183463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.13e-61cryptochrome-interacting basic-helix-loop-helix 1