PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G025400.1
Common NamePHAVU_009G025400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB_related
Protein Properties Length: 417aa    MW: 47178.2 Da    PI: 6.3648
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G025400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.71.7e-10362410247
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         ++W++ E+e l  av+++G g+Wk+I +      + Rt+ ++k++w++ 
  Phvul.009G025400.1 362 NKWSQLEEETLRTAVEKFGRGNWKLILNSHKdifEERTEVDLKDKWRNM 410
                         58********************************9************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.959356415IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-11357412IPR009057Homeodomain-like
SMARTSM007174.4E-6360413IPR001005SANT/Myb domain
SuperFamilySSF466894.21E-14362414IPR009057Homeodomain-like
PfamPF002498.9E-9362410IPR001005SANT/Myb domain
CDDcd116601.82E-17363412No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MEGEDDIGRW VLEFLLRNPP ALAGNNLIKN VFRRISVSDA NSLIKKTILL RSLRDHLSTL  60
SINDSLLNTL EHLEELLRRD ASPVTATMTA AYCAVAVDCT LKFLQVNLHH HNSAYLRAVN  120
RIWRARVPRM NGSDSREGSL LFSAELERWS SDFEASLSDS QVRERLASID ARKDSIMKLE  180
AFLAEAWADL GPSFLQLAAS LHASRAPQHQ EGEIQMCSSA AAENLHLTTT NEVEKVGDCI  240
SGELQMLAKD SLLNSFEGNE EAPTEKQSGE ADVSCSHDIN NNEADPMEKD RTSIPQNCDR  300
RPSLMEKNIT ARVYEWDDSI DDVDGGTSNY ASRFNLPTPK RRTLSPLKMY KPARITKRRK  360
VNKWSQLEEE TLRTAVEKFG RGNWKLILNS HKDIFEERTE VDLKDKWRNM TRYGCK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339359KRRTLSPLKMYKPARITKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G025400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136185.10.0hypothetical protein PHAVU_009G025400g
TrEMBLV7ARJ60.0V7ARJ6_PHAVU; Uncharacterized protein
STRINGXP_007136185.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.17e-31TRF-like 5