PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G035300.1
Common NamePHAVU_009G035300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GATA
Protein Properties Length: 339aa    MW: 36872.6 Da    PI: 4.7588
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G035300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.92.2e-16187223135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg+t+  Tp +Rrgp g++tLCnaCGl+++ kg+
  Phvul.009G035300.1 187 CHHCGVTEnnTPAMRRGPAGPRTLCNACGLMWANKGT 223
                         **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.8684984IPR010399Tify domain
SMARTSM009798.5E-74984IPR010399Tify domain
PfamPF062001.2E-95283IPR010399Tify domain
PROSITE profilePS5101712.65117159IPR010402CCT domain
PfamPF062039.2E-15117158IPR010402CCT domain
SMARTSM004019.7E-11181234IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.827181240IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-12182231No hitNo description
Gene3DG3DSA:3.30.50.106.4E-15185228IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.14E-16186230No hitNo description
PROSITE patternPS003440187214IPR000679Zinc finger, GATA-type
PfamPF003203.3E-14187223IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MASVNPQPLH FQDPAIPVHD DDDSDGADDD VMDDLEDAHI ATHEALPAMP SRTSELTLSF  60
EGEVYVFPAV TPQKVQAVLL LLGGRDVHAG VPVVELPFDQ SNRGMGDNPK RSNLSRRIAS  120
LVRFREKRKE RCFDKKIRYT VRKEVAQRMH RKNGQFASLK ESPGSSNWDA RSSAQDGTFH  180
SESVRRCHHC GVTENNTPAM RRGPAGPRTL CNACGLMWAN KGTLRDLSKG GRNLSVEQSD  240
LDIPIDVKPP TSVIEGELPG IHDEQGSSED PSKSNTADGS SGHAVNPSDE ELPETADHFR  300
NALPPGLGDS STNDTEQEPL VELSNPSDTD IDIPGNFD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G035300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0934500.0BT093450.1 Soybean clone JCVI-FLGm-17E18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136307.10.0hypothetical protein PHAVU_009G035300g
SwissprotQ8GXL74e-65GAT24_ARATH; GATA transcription factor 24
TrEMBLV7AVP50.0V7AVP5_PHAVU; Uncharacterized protein
STRINGXP_007136307.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.27e-68ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]