PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G039000.1
Common NamePHAVU_009G039000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 588aa    MW: 66150.1 Da    PI: 5.073
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G039000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.11.2e-51221481127
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lp GfrF+Ptdeel+++yL++k++g+  e+  vi+e+d++k+ePwd+p  + v++++ ew+fF+++d+ky++g+r nrat++gyWkatgkd
  Phvul.009G039000.1  22 LPLGFRFRPTDEELIDYYLRQKINGNGAEV-WVIREIDVCKWEPWDMPdlSVVRNKDPEWFFFCPQDRKYPNGHRLNRATTHGYWKATGKD 111
                         699************************999.89**************96447777888********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                         ++++s +  l+g+kktLvfy+grapkg++t+Wvmheyr
  Phvul.009G039000.1 112 RRIKS-GMMLIGMKKTLVFYTGRAPKGKRTNWVMHEYR 148
                         *****.999****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.03E-5917172IPR003441NAC domain
PROSITE profilePS5100555.73222172IPR003441NAC domain
PfamPF023651.5E-2723148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MTSVDCYPSR GDDVAAVSLD SLPLGFRFRP TDEELIDYYL RQKINGNGAE VWVIREIDVC  60
KWEPWDMPDL SVVRNKDPEW FFFCPQDRKY PNGHRLNRAT THGYWKATGK DRRIKSGMML  120
IGMKKTLVFY TGRAPKGKRT NWVMHEYRPT LKELDGTNPG QNAYVLCRLF KKHDESLEVS  180
HCDEAEQTAS TPIAANYSTE EIQSGLAVVA VSPSLVTEDD KHQAIIPTHS EEAISNVITP  240
VDCHSDGYDI SDAQNNYVAP AAEEFQPWNV DMCYDPKNEL LYDRLFSPVL ALQPEFPYQS  300
NSESDSRYGL QYGTNETNIS DFLNSVVNWD ELPYEEPNCQ QWSSPSFNVQ NSVLGSHIDS  360
ELANMTYMQA GYAEEANDRK IPLVIAPEFC STTGIPIDRG GGDEQKSNVE LFQNNSQRAF  420
TDYQQCSIFN AVPCGDTGII RKTRVVQNEK LSANVTQGTA QRRIRLVQKT RNELSNKMVK  480
NELDSKSIIA VEEKASENHA SDESATLTND GNELQKTPEP NGNRKICRQV AKASSTLGLK  540
DFLLLRRVPY ISKATSNRAK CSSIFVVSAF LMVSLVVFTD ICGYLKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-442117514171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G039000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, heat and drought stresses. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136363.10.0hypothetical protein PHAVU_009G039000g
SwissprotB5X5707e-89NAC14_ARATH; NAC domain-containing protein 14
TrEMBLV7ARS70.0V7ARS7_PHAVU; Uncharacterized protein
STRINGXP_007136363.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55513353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.14e-92NAC transcription factor-like 9