PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.009G043800.1

Common Name

PHAVU_009G043800g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

C2H2

Protein Properties

Length: 251aa MW: 28612.1 Da PI: 9.2119

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.009G043800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.3	6.4e-06	69	91	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k Fs++ L H++ H Phvul.009G043800.1 69 FSCNYCNKEFSTSQALGGHQNAH 91 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.57E-7	66	97	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.9E-5	67	95	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	6.9E-7	69	93	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.884	69	96	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	71	91	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MKYCEKKSFV PHQNQGSNSN TRVLVDFTKM SKDGDITQES SDEKVIDSSI SHSKGAAKKN 60 TKVVKTKIFS CNYCNKEFST SQALGGHQNA HKQERVVAKH CQGFDVRGLT QFPYYPYYSS 120 FYNSHSLHGR SFNEALGLRS DSMIHKHPRT SRYEHPLFKR DHEKLIFDGF RNMKNDYPII 180 KSDATLSLKL EDGNDRINLE TLTLFTNDAT ISSSQLRKMT TLPTTEIVDH YVPKEISNEP 240 SYNLDLSLKL *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.009G043800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007136422.1	0.0	hypothetical protein PHAVU_009G043800g
TrEMBL	V7AW14	0.0	V7AW14_PHAVU; Uncharacterized protein
STRING	XP_007136422.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1822	30	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	9e-13	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Phvul.009G043800.1
Entrez Gene	18619119