PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G049600.1
Common NamePHAVU_009G049600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HD-ZIP
Protein Properties Length: 245aa    MW: 28226.2 Da    PI: 5.3557
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G049600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.6e-193486456
                        -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        +++f++eq++ Le  Fe ++++  +++ +LA+ lgL+ rqV +WFqNrRa++k
  Phvul.009G049600.1 34 KRRFSDEQIRSLECIFETESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWK 86
                        568*************************************************9 PP
2HD-ZIP_I/II121.93.1e-3932124193
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         e+krr+s+eq+++LE  Fe+e+kLep++K++lar+Lglqprqva+WFqnrRAR+k+k++E++y++Lk++yd+l+++ e+L+ke+e+L+ el
  Phvul.009G049600.1  32 ENKRRFSDEQIRSLECIFETESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASRFESLKKEKESLQVEL 122
                         579*************************************************************************************999 PP

         HD-ZIP_I/II  92 ke 93 
                         ++
  Phvul.009G049600.1 123 QK 124
                         86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.98E-182488IPR009057Homeodomain-like
PROSITE profilePS5007117.5242888IPR001356Homeobox domain
SMARTSM003893.0E-163192IPR001356Homeobox domain
CDDcd000861.32E-133489No hitNo description
PfamPF000466.8E-173486IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.7E-193495IPR009057Homeodomain-like
PRINTSPR000318.6E-65968IPR000047Helix-turn-helix motif
PROSITE patternPS0002706386IPR017970Homeobox, conserved site
PRINTSPR000318.6E-66884IPR000047Helix-turn-helix motif
PfamPF021839.6E-1288128IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MEGDENIQAS KGKNVESFAC LEASRKKNKK IENKRRFSDE QIRSLECIFE TESKLEPRKK  60
MQLARDLGLQ PRQVAIWFQN RRARWKSKRI EQEYRKLKDE YDNLASRFES LKKEKESLQV  120
ELQKLSDLVE SSHDGGREDK GAKEHSIEDG GSGSGYSSWK PEAKPRFSTE GVEERVGVYS  180
DDQNENSIIR SEKSEDKGHQ LLRVDDNDQA EIPLASLEKW YSSVDPNGIL DQSCSSSQWL  240
DFWT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G049600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0935440.0BT093544.1 Soybean clone JCVI-FLGm-17O6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136490.11e-178hypothetical protein PHAVU_009G049600g
TrEMBLV7ASD21e-176V7ASD2_PHAVU; Uncharacterized protein
STRINGXP_007136490.11e-177(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.15e-44homeobox 7