PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G058500.1
Common NamePHAVU_009G058500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB_related
Protein Properties Length: 89aa    MW: 10435.7 Da    PI: 7.7946
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G058500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.12.7e-10345444
                        S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                        WT eE  ++ da + +G++   +W  +a  +g g++  ++k ++
  Phvul.009G058500.1  3 WTREENRRFEDALAVHGPDdpnRWQHVADAVG-GKSVQEVKMHY 45
                        *****************99*************.********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.631153IPR017884SANT domain
SuperFamilySSF466892.77E-12356IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-5346IPR009057Homeodomain-like
SMARTSM007173.5E-5351IPR001005SANT/Myb domain
CDDcd001672.03E-7345No hitNo description
PfamPF002493.1E-8345IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MGWTREENRR FEDALAVHGP DDPNRWQHVA DAVGGKSVQE VKMHYEILQE DVIRIERDQI  60
PLPRYRGASI NGRQIDNEQR RMRNLTLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-223881193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G058500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-88AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136600.12e-59hypothetical protein PHAVU_009G058500g
SwissprotQ1A1732e-26RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLV7ASN05e-58V7ASN0_PHAVU; Uncharacterized protein
STRINGXP_007136600.18e-59(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF153651012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.29e-29RAD-like 6