PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G060500.1
Common NamePHAVU_009G060500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TALE
Protein Properties Length: 423aa    MW: 47463.8 Da    PI: 6.696
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G060500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.71.1e-093503822254
                         SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         ++yp+ +e+  LA+++gLt++qV++WF N R +
  Phvul.009G060500.1 350 HPYPNDSEKLMLASQTGLTKNQVSNWFINARVR 382
                         89*****************************88 PP
2BELL96.13e-31208278272
                BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         ++e+++k+a+L+sll++ + r ++y++q++ v+ssFe++aglg+ak Yt+lAl+a+SrhF +L++ai +qi
  Phvul.009G060500.1 208 KHEHHIKIARLISLLDKAEGRCEKYYHQMEEVVSSFEMIAGLGAAKCYTALALQAMSRHFCSLREAILSQI 278
                         799******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.5E-24139276IPR006563POX domain
PfamPF075262.3E-36144274IPR006563POX domain
CDDcd000867.97E-12326387No hitNo description
SMARTSM003893.7E-9326390IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.1E-27331392IPR009057Homeodomain-like
SuperFamilySSF466893.29E-17332394IPR009057Homeodomain-like
PfamPF059201.9E-16343382IPR008422Homeobox KN domain
PROSITE profilePS5007111.888345386IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MLMALPRHNN AFPEALGAFP SIGMAEGSEI SHPRHFMDLL GAANESNHHQ PQGLSLSLGS  60
HMLIPSDEYR HHQRPLNTGL INPNFFMPGQ EARVACNPPV EHLTSDYFFN TDTGTNTFVS  120
SSSAPLNRSP NSTPYAPPES FASVIGNSRY LKPVQSLLED LVDVGGNVVD RINEKYVEKM  180
LHGSRGVRIL SSELKAELRN NGPLLADKHE HHIKIARLIS LLDKAEGRCE KYYHQMEEVV  240
SSFEMIAGLG AAKCYTALAL QAMSRHFCSL REAILSQINA EKRKLFQDLP KISSGLSQLS  300
LFDRDIRHSR MSLQQLGVIQ SQRQVWRPIR GLPETSVAIL RSWIFEHFLH PYPNDSEKLM  360
LASQTGLTKN QVSNWFINAR VRLWKPMIEE MYKDEFGESS EDSNPAANNC LTREDTTDCV  420
ED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A5e-16332390563Homeobox protein Meis2
3k2a_B5e-16332390563Homeobox protein Meis2
4xrm_A5e-16332390563Homeobox protein Meis2
4xrm_B5e-16332390563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G060500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136632.10.0hypothetical protein PHAVU_009G060500g
SwissprotQ1PFD11e-102BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLV7AWL80.0V7AWL8_PHAVU; Uncharacterized protein
STRINGXP_007136632.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126452329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.11e-105BEL1-like homeodomain 11