PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G064100.1
Common NamePHAVU_009G064100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 229aa    MW: 25749.5 Da    PI: 10.3458
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G064100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.41.1e-17128218199
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                         f+k +++s+v+   +l lp +f++++  +    ++  +tl de+g+++   +  rk++    l++GWk+F+ a++L +gD ++F+l++r+ 
  Phvul.009G064100.1 128 FIKSMLQSHVSGGFWLGLPVHFCKSNlpK----GDEVMTLIDEDGNEYPTIYLPRKSG----LSGGWKGFAVAHDLADGDALIFQLIRRTA 210
                         89*********************999543....4458***************444444....9*************************999 PP

                         E..EEEEE-S CS
                  B3  90 felvvkvfrk 99 
                         f  +v ++r+
  Phvul.009G064100.1 211 F--KVYIIRA 218
                         9..8988886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-20122219IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.59E-24122219IPR015300DNA-binding pseudobarrel domain
CDDcd100171.01E-27126217No hitNo description
PROSITE profilePS5086312.21128219IPR003340B3 DNA binding domain
SMARTSM010192.6E-24128219IPR003340B3 DNA binding domain
PfamPF023621.6E-15128218IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MVAASAYEES RRKRLEENRK RMEALNLPLL SRALHKSHSP ASSPSKSVKK RNIQEPMVVV  60
RRSGRLANLP SPIYKEIVID RVSIARRNIG NRHRDFVNRV YASDESRKEA LEKAENLTSG  120
LESDYPNFIK SMLQSHVSGG FWLGLPVHFC KSNLPKGDEV MTLIDEDGNE YPTIYLPRKS  180
GLSGGWKGFA VAHDLADGDA LIFQLIRRTA FKVYIIRANS ASEDKQLK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G064100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150352e-80AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136672.11e-168hypothetical protein PHAVU_009G064100g
SwissprotQ9FMZ42e-76Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLV7AWT61e-167V7AWT6_PHAVU; Uncharacterized protein
STRINGXP_007136672.11e-167(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.15e-76B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]