PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G075500.1
Common NamePHAVU_009G075500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 252aa    MW: 27883.3 Da    PI: 8.0679
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G075500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.75.5e-1082102526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          C+++++ G Ck+Gd+C+FaHg
  Phvul.009G075500.1  82 ACPDYRK-GNCKRGDTCQFAHG 102
                         7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.27E-576106IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.94377104IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-877103IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-778104IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-881102IPR000571Zinc finger, CCCH-type
SMARTSM0035641112135IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MIPNVQIHLW DSAAADGGPL SPFSPNAPDT ASFSTDHFLM FQFKVLTCPR ARSHDWTECP  60
YAHPAEKARR RDPRKFLYSA TACPDYRKGN CKRGDTCQFA HGVFECWLHP SRYRTHLCKD  120
GTNCRRRVCF FAHTNDQLRL VPESSSLSSP TSVMNSSFFD SPPSSPYVHN IQEIVSSMRS  180
VQLDDGLFSG LTRCVFGSPR GGILSGNACE EEEAAMERVE SGRDIRARIY AKLSRDNSIG  240
GSAPHIGFGG L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G075500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136803.10.0hypothetical protein PHAVU_009G075500g
SwissprotO823079e-73C3H23_ARATH; Zinc finger CCCH domain-containing protein 23
TrEMBLV7AT190.0V7AT19_PHAVU; Uncharacterized protein
STRINGXP_007136803.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.27e-67C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]