PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G077500.1
Common NamePHAVU_009G077500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GATA
Protein Properties Length: 226aa    MW: 24914.2 Da    PI: 9.7475
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G077500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.62e-1994126133
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                         C+ C+tt+TplWR+gp+g+k+LCnaCG+++rk 
  Phvul.009G077500.1  94 CADCNTTSTPLWRSGPNGPKSLCNACGIRQRKA 126
                         *******************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.33E-1387129No hitNo description
SMARTSM004011.1E-1888139IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.8E-1692128IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.80992124IPR000679Zinc finger, GATA-type
CDDcd002021.09E-1393125No hitNo description
PROSITE patternPS00344094119IPR000679Zinc finger, GATA-type
PfamPF003204.4E-1794127IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
DGKFVFHGGS LDNQQVCIAS STQPKSVMAD PISRACGHHD LSFNKIENQE NKRGNYDQYE  60
KWLSSNVRFT RKMMSPPSTN SDLATNKFDI IRVCADCNTT STPLWRSGPN GPKSLCNACG  120
IRQRKAKRAM AEAANGFAPS TSVDAKSRVR SHKEKKCRTN HSARFKNKCK TATSGAARGT  180
LSEEDLKDFA IGLRDDSDLK QVFPMDEVAQ AALLLMDLSR AFLYL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G077500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136825.11e-169hypothetical protein PHAVU_009G077500g, partial
TrEMBLV7ATC11e-168V7ATC1_PHAVU; Uncharacterized protein (Fragment)
STRINGXP_007136825.11e-169(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.12e-22cytokinin-responsive gata factor 1