PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G087400.1
Common NamePHAVU_009G087400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 291aa    MW: 32095.9 Da    PI: 7.5311
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G087400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.83.1e-30138195258
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                         +Dgy+WrKYGqK+ ++++ pr+Y++C++a gCpvkkkv+rs edp+v+++tYegeHnh
  Phvul.009G087400.1 138 RDGYQWRKYGQKVTRDNPSPRAYFKCSYApGCPVKKKVQRSVEDPTVLVTTYEGEHNH 195
                         7***************************99**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-29131196IPR003657WRKY domain
SuperFamilySSF1182901.57E-25134196IPR003657WRKY domain
SMARTSM007747.2E-35137197IPR003657WRKY domain
PfamPF031063.1E-25139195IPR003657WRKY domain
PROSITE profilePS5081126.291139198IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MSLNSEANLS SMEPTCVDTS LNLNVIPSSH IDVAGEFLVE ELRRLNSENK RLSETLKHVC  60
ESYVALQKHV SEFNLLKNAD FEKEEKPSPK RKVENGVNAY AECNTEEETF KRPKQSTTPK  120
VSKVFVRTDA SDTSLYVRDG YQWRKYGQKV TRDNPSPRAY FKCSYAPGCP VKKKVQRSVE  180
DPTVLVTTYE GEHNHGEHEM EISGKSESPG GGGGGGTGSV GCSRSASSGR IEALELVHSR  240
VVDMNAQKSW IHQFLVQQMA TSLTRDPNFT AALASAISGR ILDDTSMSKR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-211391951974Probable WRKY transcription factor 4
2lex_A5e-211391951974Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G087400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136948.10.0hypothetical protein PHAVU_009G087400g
TrEMBLV7ATG20.0V7ATG2_PHAVU; Uncharacterized protein
STRINGXP_007136948.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.21e-59WRKY DNA-binding protein 18