PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G104400.2
Common NamePHAVU_009G104400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 358aa    MW: 39256.4 Da    PI: 8.9391
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G104400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.21.8e-54271541128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeelv++yL +k+++++++  ++i++vd++k+ePw+Lp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke
  Phvul.009G104400.2  27 LPPGFRFHPTDEELVTCYLLNKISDSNFTG-RAITDVDLNKSEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKE 116
                         79*************************999.89***************99999************************************** PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +l++ ++el+g+kktLvfykgrap+gek++Wvmheyr+
  Phvul.009G104400.2 117 ILNSaTSELIGMKKTLVFYKGRAPRGEKSNWVMHEYRM 154
                         **9878899***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-6324175IPR003441NAC domain
PROSITE profilePS5100560.21527175IPR003441NAC domain
PfamPF023651.8E-2828154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MQKEKEAIIK EGTDTEMEGS LPKEETLPPG FRFHPTDEEL VTCYLLNKIS DSNFTGRAIT  60
DVDLNKSEPW ELPGKAKMGE KEWYFFSLRD RKYPTGVRTN RATNTGYWKT TGKDKEILNS  120
ATSELIGMKK TLVFYKGRAP RGEKSNWVMH EYRMHSKPTF RTTRDEWVVC RVFKKSGGAK  180
KFPSSNHARA VNPYSLEIGP NIMPPPLMQL GDPSAHFLYG RNYMSSVELG ELARVLRGGG  240
STSSVNQPMQ SQLGYPTSAA AAGGGGGFTI SGLNLNLGGG GGATSTTQPI FRPMQPSSAA  300
PVHTMAQVVD VNSSMMTSGS LGADVGYGSE LSNMNSHGNR FMGMEHCMDL DNYWPSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-562618116171NO APICAL MERISTEM PROTEIN
1ut4_B3e-562618116171NO APICAL MERISTEM PROTEIN
1ut7_A3e-562618116171NO APICAL MERISTEM PROTEIN
1ut7_B3e-562618116171NO APICAL MERISTEM PROTEIN
3swm_A4e-562618119174NAC domain-containing protein 19
3swm_B4e-562618119174NAC domain-containing protein 19
3swm_C4e-562618119174NAC domain-containing protein 19
3swm_D4e-562618119174NAC domain-containing protein 19
3swp_A4e-562618119174NAC domain-containing protein 19
3swp_B4e-562618119174NAC domain-containing protein 19
3swp_C4e-562618119174NAC domain-containing protein 19
3swp_D4e-562618119174NAC domain-containing protein 19
4dul_A3e-562618116171NAC domain-containing protein 19
4dul_B3e-562618116171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G104400.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-118AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007137155.10.0hypothetical protein PHAVU_009G104400g
TrEMBLV7AUA80.0V7AUA8_PHAVU; Uncharacterized protein
STRINGXP_007137154.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-103NAC domain containing protein 38