PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G118600.2
Common NamePHAVU_009G118600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GATA
Protein Properties Length: 114aa    MW: 12816.6 Da    PI: 10.4002
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G118600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA44.81.7e-1472106335
                GATA   3 nCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         nCg ++  Tp++Rrgp+g+ tLCnaCGl ++ +g+
  Phvul.009G118600.2  72 NCGISSkcTPMMRRGPSGPGTLCNACGLSWANRGV 106
                         89999999***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5101710.3971355IPR010402CCT domain
PfamPF062038.1E-101353IPR010402CCT domain
SMARTSM004011.3E-467113IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-1072106IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.13E-872106No hitNo description
PfamPF003207.7E-1272106IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.04E-772107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MECEYEYGGE SHRAASLSRF RQKRKRRCFA NKIRYRTRQE ATLRVHRSKS QFILSKIQDS  60
AGQDVIHSEI LNCGISSKCT PMMRRGPSGP GTLCNACGLS WANRGVFNCN KAD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G118600.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007137338.12e-80hypothetical protein PHAVU_009G118600g
SwissprotQ9LRH63e-35GAT25_ARATH; GATA transcription factor 25
TrEMBLV7AUK55e-79V7AUK5_PHAVU; Uncharacterized protein
STRINGXP_007137337.11e-77(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.21e-37GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]