PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G123300.1
Common NamePHAVU_009G123300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 236aa    MW: 25428.4 Da    PI: 5.2876
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G123300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-174089255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +ykGVr ++ +g+Wv+eIr p   ++++r++lg++ t++ Aa+a++aa ++l+g
  Phvul.009G123300.1 40 KYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTPDAAARAYDAALLCLKG 89
                        8*****998.**********9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.9E-293998IPR001471AP2/ERF domain
PROSITE profilePS5103221.0874097IPR001471AP2/ERF domain
CDDcd000182.54E-194099No hitNo description
PfamPF008475.8E-114089IPR001471AP2/ERF domain
SMARTSM003801.7E-3340103IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-194099IPR016177DNA-binding domain
PRINTSPR003674.1E-84152IPR001471AP2/ERF domain
PRINTSPR003674.1E-86379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MVKSEHKIKT EPSSKAMRSI SSLSASSPAP ASASDSKKRK YKGVRMRSWG SWVSEIRAPN  60
QKTRIWLGSY STPDAAARAY DAALLCLKGS SAHFNFPLSS SQYIPGDAVM SPKSIQRVAA  120
AAANSFIDNA TIPLSASPAS TSSSSLVSSP SMASSPSDQV DDDASPMSSL EAYTSCHQAN  180
ESMAMNVMEP WYTLDDLQSP KYVDQMLSCA FFDVDSSLLL DDLYEESDIR LWSFC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G123300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007137389.11e-169hypothetical protein PHAVU_009G123300g
TrEMBLV7AXP81e-168V7AXP8_PHAVU; Uncharacterized protein
STRINGXP_007137389.11e-168(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47983156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.13e-31ERF family protein