PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G133800.2
Common NamePHAVU_009G133800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 597aa    MW: 66323.6 Da    PI: 4.5234
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G133800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS450.79.2e-1382235932374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         ++lL+ecA a+s+g+  + ++++++l++++s +g+p qR+aay++e+Laarla+s++++ykal+++e +   ss++laa+++++ev+P++k
  Phvul.009G133800.2 223 KQLLYECAIALSEGNEVEGSSMINNLRQMVSIQGEPSQRIAAYMVEGLAARLAESGKSIYKALRCKEPP---SSDRLAAMQILFEVCPCFK 310
                         589*****************************************************************9...9****************** PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                         f++++aN+aI eav+ +  +HiiDfdi+qG Q+++L+q+LasR+++pp++R+Tgv++pes+  s   l+++g+rL+k+Ae+lg+pfef++ 
  Phvul.009G133800.2 311 FGFIAANNAITEAVKDDMNIHIIDFDINQGSQYINLIQTLASRSSKPPHVRLTGVDDPESVqrSIGGLKNIGQRLEKLAEALGLPFEFRA- 400
                         ***********************************************************9988899************************. PP

                GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                         va+r++ +++++L+++pgEal+Vn+++qlh+++desvs+ +erd++L+lvksl+Pk+v+vveq++++n+++Fl rf+e+ +yysa+f+sl+
  Phvul.009G133800.2 401 VASRTSIVTPSMLNCSPGEALVVNFAFQLHHMPDESVSTVNERDQLLRLVKSLNPKLVTVVEQDVNTNTTPFLPRFVESYNYYSAVFESLD 491
                         7****************************************************************************************** PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                         ++lpres++r++vEr++l+r+ivnvvaceg++r+er e ++kWr+r+++aGF++ p+s++++++++ l++ ++ d y+++ee g+l +gW+
  Phvul.009G133800.2 492 VTLPRESQDRMNVERQCLARDIVNVVACEGEDRIERYEVAGKWRARMTMAGFTSSPMSTNVTDEIRKLIKVMYCDRYKIKEEMGALHFGWE 582
                         *************************************************************************888*************** PP

                GRAS 364 drpLvsvSaWr 374
                         d++L+++SaW+
  Phvul.009G133800.2 583 DKNLIVASAWK 593
                         **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.835196573IPR005202Transcription factor GRAS
PfamPF035143.2E-135223593IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MSLVRSVDLA PTSYKNAKLF SLKGTDVRPG LSSQIFGPDK HRSMDMADSY SSESYEKYFH  60
DCQTEELIEP SNSSISGSSI PPDVASSYQL TASSEASVVA NNPFDCSFMS TMHHDGYQSN  120
FGSDLMDNGS LDSRKTDGLM SLKLQALERA LLDDSEAEEE ELEEEDIFEA VQSMEIDPDL  180
AEWADSMQNV VLHDSPKEYS SSDSSISSIS STKEISLTSQ TPKQLLYECA IALSEGNEVE  240
GSSMINNLRQ MVSIQGEPSQ RIAAYMVEGL AARLAESGKS IYKALRCKEP PSSDRLAAMQ  300
ILFEVCPCFK FGFIAANNAI TEAVKDDMNI HIIDFDINQG SQYINLIQTL ASRSSKPPHV  360
RLTGVDDPES VQRSIGGLKN IGQRLEKLAE ALGLPFEFRA VASRTSIVTP SMLNCSPGEA  420
LVVNFAFQLH HMPDESVSTV NERDQLLRLV KSLNPKLVTV VEQDVNTNTT PFLPRFVESY  480
NYYSAVFESL DVTLPRESQD RMNVERQCLA RDIVNVVACE GEDRIERYEV AGKWRARMTM  540
AGFTSSPMST NVTDEIRKLI KVMYCDRYKI KEEMGALHFG WEDKNLIVAS AWKLPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6822859625381Protein SCARECROW
5b3h_A1e-6822859624380Protein SCARECROW
5b3h_D1e-6822859624380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G133800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007137518.10.0hypothetical protein PHAVU_009G133800g
RefseqXP_007137519.10.0hypothetical protein PHAVU_009G133800g
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLV7AY200.0V7AY20_PHAVU; Uncharacterized protein
STRINGXP_007137518.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]