PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G137500.1
Common NamePHAVU_009G137500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 353aa    MW: 39557.2 Da    PI: 5.8769
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G137500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.82.2e-28128189159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK++ g+ +pr+YYrCt++   gC+++k+v+rs+ed +++ei Y+g+H+++
  Phvul.009G137500.1 128 LDDGYSWRKYGQKDILGAMYPRGYYRCTHRtvqGCMATKQVQRSDEDSTIFEINYRGKHTCT 189
                         59***************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.686123191IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-28124189IPR003657WRKY domain
SuperFamilySSF1182903.27E-25127189IPR003657WRKY domain
SMARTSM007741.7E-39128190IPR003657WRKY domain
PfamPF031067.6E-26129188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDNMGDPKSI MKELLQGLEL ARQLQVYLHT PSSSQETRDL IQKIISTFEK ALEMVNWKGP  60
VPKGESSQLP ITAAIRMSDS PISSSPQSED SERDLKDQDH NAFRKRNTLP RWTKRIRVTP  120
GMGVEGPLDD GYSWRKYGQK DILGAMYPRG YYRCTHRTVQ GCMATKQVQR SDEDSTIFEI  180
NYRGKHTCTV AHNMGSSSII PLENQEPSLN NTNQQQNILQ SLEQQPNDLL LNLREGLRVQ  240
TENLDSTDQS FAPFLFPLST NIKNEGQVFP PHLLENFSSP YMSPATSGIS HYSVSPSRVN  300
SVVGNPNLAT FESHINDMIP AATSAPNSAA VALEFPFNQF EFDGQNFRFD NP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-191301861874Disease resistance protein RRS1
5w3x_D6e-191301861874Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G137500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007137568.10.0hypothetical protein PHAVU_009G137500g
TrEMBLV7AV760.0V7AV76_PHAVU; Uncharacterized protein
STRINGXP_007137568.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.16e-47WRKY DNA-binding protein 30