PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G137900.1
Common NamePHAVU_009G137900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 297aa    MW: 32439.8 Da    PI: 9.6664
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G137900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.74.4e-21125175256
                 AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                         +y+GVr+++ +g+W+AeIrd +     + +r++lg+f+tae Aa+a+++a+++++g+
  Phvul.009G137900.1 125 KYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDTAEAAARAYDEAALRFRGN 175
                         8********.**********66.....56*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.2E-33124183IPR001471AP2/ERF domain
PROSITE profilePS5103225.686125182IPR001471AP2/ERF domain
PfamPF008471.5E-14125174IPR001471AP2/ERF domain
CDDcd000182.46E-22125184No hitNo description
SMARTSM003801.0E-36125188IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-23125183IPR016177DNA-binding domain
PRINTSPR003676.4E-12126137IPR001471AP2/ERF domain
PRINTSPR003676.4E-12148164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MMNSTALPRL FPGMNREREM SAMVSALTHV VTGEVPTTTD SVTPDVPSSA STTPSLPSSS  60
NYILASSSSK RTREQDTPCF SQASSVPRSG ECSNNSRSRI RREMGNAVYE YKTTENVRRD  120
EERRKYRGVR QRPWGKWAAE IRDPFKAARV WLGTFDTAEA AARAYDEAAL RFRGNKAKLN  180
FPENVTLRQP EFSVSNSATS LASISTSRDQ VVHTPSFLPS QAATNVYEYF QLSGYPTNLY  240
NDRTLVTSSM ASQLHSSSSS SAFVSSSQDT SLSSFYSSQI PPPPWSASAP SSSSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-22124185163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G137900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007137573.10.0hypothetical protein PHAVU_009G137900g
TrEMBLV7AV800.0V7AV80_PHAVU; Uncharacterized protein
STRINGXP_007137573.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49333254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.15e-22ethylene response factor 110