PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G138600.1
Common NamePHAVU_009G138600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 236aa    MW: 26766.3 Da    PI: 9.2343
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G138600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.42.6e-32158216159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  Phvul.009G138600.1 158 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 216
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.0E-34143216IPR003657WRKY domain
SuperFamilySSF1182908.89E-29150217IPR003657WRKY domain
PROSITE profilePS5081129.344153218IPR003657WRKY domain
SMARTSM007749.8E-37158217IPR003657WRKY domain
PfamPF031063.6E-25159215IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MMSTTSQTSL NHSLFEEQDQ IPTQMGFNIP FPSNQAFPPL GCHQSLKSIS AVVPSLSSEP  60
ASSAPNFAET LFSTAVQRPR EDLTSSLVGG GGQLLSLNRS RVNPWAWEEV SDCLMSKRMG  120
DDNRHLGVSA MKMKKMKGRR KVREPRFCFK TMSEVDVLDD GYKWRKYGQK VVKNTQHPRS  180
YYRCTQDNCR VKKRVERLAE DPRMVITTYE GRHVHSPSNE LEDSHSPSEL SSFFW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-27149215874Probable WRKY transcription factor 4
2lex_A2e-27149215874Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G138600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195811e-145EU019581.1 Glycine max WRKY45 (WRKY45) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007137585.11e-178hypothetical protein PHAVU_009G138600g
TrEMBLV7AVF21e-177V7AVF2_PHAVU; Uncharacterized protein
STRINGXP_007137585.11e-177(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40793361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.12e-54WRKY DNA-binding protein 13