PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G147500.1
Common NamePHAVU_009G147500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Trihelix
Protein Properties Length: 515aa    MW: 58891 Da    PI: 7.0309
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G147500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix933e-2942127187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW+k+e++aL+++r++m+ ++r+++ k+plWe+vs+k++e g+ rs+k+C+ek+en+ k++++ikeg++++ s+ s+t+++f+qlea
  Phvul.009G147500.1  42 RWPKEETMALLNIRSDMDVAFRDTNPKAPLWEQVSRKLAELGYIRSAKKCREKFENIYKYHRRIKEGRSGK-SNGSKTYRFFEQLEA 127
                         8********************************************************************86.78889********85 PP
2trihelix94.11.3e-29337427186
            trihelix   1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                         rW+k+ev aLi++r++++ +++ ++      +k+plWee+s +m+  g++rs+k+Ckekwen+nk++k++ke +k++ +e+s+tcpy+++l
  Phvul.009G147500.1 337 RWPKDEVEALIRLRTQLDVQSQGNSnssngvSKGPLWEEISLAMKGLGYNRSAKRCKEKWENINKYFKRMKEKNKRK-PEDSKTCPYYHHL 426
                         8**************9988888543345666********************************************96.9***********9 PP

            trihelix  86 e 86 
                         e
  Phvul.009G147500.1 427 E 427
                         7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.1893599IPR017877Myb-like domain
SMARTSM007170.139101IPR001005SANT/Myb domain
CDDcd122033.79E-2141106No hitNo description
PfamPF138375.4E-1941128No hitNo description
SMARTSM007176.5E-6334402IPR001005SANT/Myb domain
CDDcd122031.16E-21336407No hitNo description
PROSITE profilePS500907.468336400IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.3E-4336399IPR009057Homeodomain-like
PfamPF138372.7E-20336427No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MLQISTSPET PLANPEGDAA PVSEGLKPEH GEDGDRNSAA SRWPKEETMA LLNIRSDMDV  60
AFRDTNPKAP LWEQVSRKLA ELGYIRSAKK CREKFENIYK YHRRIKEGRS GKSNGSKTYR  120
FFEQLEALEG HHSLLPPSVS DPETTTTTTT HVPHNKINPS NNFDVILDAV PCSVSAYAGE  180
HSSSTTSCSG KEFRKKKLTR FLEGLMREVI EKQETLQRKF MEVLEKCEKD RVAREEAWKK  240
EELALIKKER ELLAQERSIA AAKDEVVLAF LRKFAQAEGT VQLLEKIQVQ NDKHRNMQQS  300
GNINFSANGG GDVSDVDKRE CGNNLSVRNF VHMSSSRWPK DEVEALIRLR TQLDVQSQGN  360
SNSSNGVSKG PLWEEISLAM KGLGYNRSAK RCKEKWENIN KYFKRMKEKN KRKPEDSKTC  420
PYYHHLEVLY SKKPKRVDVN DFGKQLKPEE LLMHIMESQS QEERQAQEQQ QLQSQSSSEH  480
DERENRDKHE EDDEDQNGFQ DVMVEDSPSI TIMS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G147500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007137690.10.0hypothetical protein PHAVU_009G147500g
TrEMBLV7AVU40.0V7AVU4_PHAVU; Uncharacterized protein
STRINGXP_007137690.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-108Trihelix family protein