PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G155500.1
Common NamePHAVU_009G155500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NF-YB
Protein Properties Length: 217aa    MW: 24541.1 Da    PI: 6.7224
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G155500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB179.33.3e-5642137297
               NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                         +eqdrflPianv+rimkk++P+n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfedyv+plk yl+ky+e
  Phvul.009G155500.1  42 KEQDRFLPIANVGRIMKKAIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVDPLKSYLQKYKE 132
                         89***************************************************************************************** PP

               NF-YB  93 legek 97 
                         +egek
  Phvul.009G155500.1 133 IEGEK 137
                         **996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.1E-5436164IPR009072Histone-fold
SuperFamilySSF471138.85E-4144162IPR009072Histone-fold
PfamPF008081.7E-2847111IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006155.6E-207593No hitNo description
PROSITE patternPS0068507894IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006155.6E-2094112No hitNo description
PRINTSPR006155.6E-20113131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MEDESHTNLP NAFITASPES PSLKPSNNTT TTTNHHHNNN NKEQDRFLPI ANVGRIMKKA  60
IPGNGKISKD AKETVQECVS EFISFVTGEA SDKCQREKRK TINGDDIIWA ITTLGFEDYV  120
DPLKSYLQKY KEIEGEKLNI PKRQRSEQRL HHQHQNPHQD QNNNNNNLSS SVYSSPTLLS  180
QPSYVPTDQL FSLPFSPNSL QKQLQPQDQI DSVGQW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B2e-4542132494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A2e-4542132494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G155500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007137789.11e-161hypothetical protein PHAVU_009G155500g
SwissprotQ9SIT93e-70NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBLV7AYV51e-159V7AYV5_PHAVU; Uncharacterized protein
STRINGXP_007137789.11e-160(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132492430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.13e-64nuclear factor Y, subunit B7
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]