PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G164300.1
Common NamePHAVU_009G164300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 344aa    MW: 38601.2 Da    PI: 7.5839
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G164300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.43e-09169216455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Phvul.009G164300.1 169 SHSLAERVRREKISERMKVLQRLVPGC----DKVTGKALMLDEIINYVQSLQ 216
                         8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.60E-10163220No hitNo description
SuperFamilySSF474593.27E-17163232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-17165234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.79165215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-6169216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-10171221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MAAFSYQYHP FLVDPAFFPS NMNTPSSPPP PQFHLPQETS FNVTNQETSC VDQSSKITIS  60
DNEPSVTKNL SPQSSVVVDK LETGEQVTQK VHTPVEKKRR TRNGSSLTSN TQSKDTAAEG  120
RTKKQRKNNG GVKEEDKAKV EKKEQRKCPE EPPTGYIHVR ARRGQATDSH SLAERVRREK  180
ISERMKVLQR LVPGCDKVTG KALMLDEIIN YVQSLQNQVE FLSMKLASMN PMFYDLSSDI  240
DTLLVRPEKL NSMASPSPIP CVSHCNSPNQ ATTFADTTTM TPTNIFHNAS DYLLDNSTSF  300
FLQGQRSTMF SEEDTGSHLW DAEDQRQKFL HPYGFSNNLC SFH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G164300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312510.0KT031251.1 Glycine max clone HN_CCL_22 bHLH transcription factor (Glyma04g37690.1_like1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007137888.10.0hypothetical protein PHAVU_009G164300g
TrEMBLV7AW580.0V7AW58_PHAVU; Uncharacterized protein
STRINGXP_007137888.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.23e-56bHLH family protein