PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G169300.1
Common NamePHAVU_009G169300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 477aa    MW: 53747.4 Da    PI: 6.5583
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G169300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.99.9e-1532122199
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                         ffk  t+ d+l++  l++p  f  ++  +++   +k++ l+d+sg++W+vk+  +   g++v+++GW++F    gLk+g  +vF ++++  
  Phvul.009G169300.1  32 FFKFITRQDYLTT--LCIPPAFS-SIvaNMV---NKKINLNDSSGQQWKVKV--SEVNGSFVFGEGWSSFSLGLGLKVGYLLVFNYIKDLH 114
                         8899999999987..9******8.6644333...468***************..999999**************************98766 PP

                         E..EEEEE-S CS
                  B3  90 felvvkvfrk 99 
                         f   vk++++
  Phvul.009G169300.1 115 F--DVKIYDT 122
                         6..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.7E-1928125IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-1928125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.01230123IPR003340B3 DNA binding domain
CDDcd100172.70E-1331121No hitNo description
PfamPF023627.0E-1232121IPR003340B3 DNA binding domain
SMARTSM010191.9E-832123IPR003340B3 DNA binding domain
CDDcd100171.61E-7388455No hitNo description
SuperFamilySSF1019363.14E-11388471IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-10407474IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.248410476IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MGGEEQGVSV CAACFHNCLL FHPTKPTSPT SFFKFITRQD YLTTLCIPPA FSSIVANMVN  60
KKINLNDSSG QQWKVKVSEV NGSFVFGEGW SSFSLGLGLK VGYLLVFNYI KDLHFDVKIY  120
DTSACEKLGF SKKRDQKKRS RGKIVSPVRD GILVRQEPNA PKMKRQCSEV DLDLPQNSKE  180
SGQLMHISDH CEDPCYSKRQ EFDQSHGDDG TMKIENGDLN VSNVDYESNI FEKDAMTCSK  240
DTMFEGKFST EVALDISELE KSGRSVSLGE AETSTYGKTS NLKFEENKAI LSNMEAQECQ  300
FSKGLGEMKK LPEDMTPNLD SSMDELNLTG EVSKQLKKEL VTLVELEATG LPTEIKGLLD  360
SDIFNEDNAR HSKTTHLSCV VPHDNVCLKL PKCLPMIRRV KVDQLRKMVV FLRDPLRRLW  420
PVFYHEKPHL QLLAHGWLDF CRANNIQAKD ECIFEAEVDP ECKSKHILSV HIVHNK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G169300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007137956.10.0hypothetical protein PHAVU_009G169300g
TrEMBLV7AXC20.0V7AXC2_PHAVU; Uncharacterized protein
STRINGXP_007137956.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124762828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.11e-08B3 family protein