PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G169300.3
Common NamePHAVU_009G169300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 420aa    MW: 47540.2 Da    PI: 6.4498
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G169300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.32.5e-124653499
                        SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                        k++ l+d+sg++W+vk+  +   g++v+++GW++F    gLk+g  +vF ++++  f   vk++++
  Phvul.009G169300.3  4 KKINLNDSSGQQWKVKV--SEVNGSFVFGEGWSSFSLGLGLKVGYLLVFNYIKDLHF--DVKIYDT 65
                        689**************..999999**************************987666..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.619166IPR003340B3 DNA binding domain
SuperFamilySSF1019367.85E-14370IPR015300DNA-binding pseudobarrel domain
PfamPF023623.1E-9464IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-14468IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-10464No hitNo description
SuperFamilySSF1019362.55E-11331414IPR015300DNA-binding pseudobarrel domain
CDDcd100171.64E-7331398No hitNo description
Gene3DG3DSA:2.40.330.102.0E-10350417IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.248353419IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MVNKKINLND SSGQQWKVKV SEVNGSFVFG EGWSSFSLGL GLKVGYLLVF NYIKDLHFDV  60
KIYDTSACEK LGFSKKRDQK KRSRGKIVSP VRDGILVRQE PNAPKMKRQC SEVDLDLPQN  120
SKESGQLMHI SDHCEDPCYS KRQEFDQSHG DDGTMKIENG DLNVSNVDYE SNIFEKDAMT  180
CSKDTMFEGK FSTEVALDIS ELEKSGRSVS LGEAETSTYG KTSNLKFEEN KAILSNMEAQ  240
ECQFSKGLGE MKKLPEDMTP NLDSSMDELN LTGEVSKQLK KELVTLVELE ATGLPTEIKG  300
LLDSDIFNED NARHSKTTHL SCVVPHDNVC LKLPKCLPMI RRVKVDQLRK MVVFLRDPLR  360
RLWPVFYHEK PHLQLLAHGW LDFCRANNIQ AKDECIFEAE VDPECKSKHI LSVHIVHNK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G169300.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007137958.10.0hypothetical protein PHAVU_009G169300g
TrEMBLV7AWC80.0V7AWC8_PHAVU; Uncharacterized protein
STRINGXP_007137956.10.0(Phaseolus vulgaris)