PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G169300.5
Common NamePHAVU_009G169300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 392aa    MW: 43619.3 Da    PI: 5.1131
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G169300.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.47.1e-1532122199
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                         ffk  t+ d+l++  l++p  f  ++  +++   +k++ l+d+sg++W+vk+  +   g++v+++GW++F    gLk+g  +vF ++++  
  Phvul.009G169300.5  32 FFKFITRQDYLTT--LCIPPAFS-SIvaNMV---NKKINLNDSSGQQWKVKV--SEVNGSFVFGEGWSSFSLGLGLKVGYLLVFNYIKDLH 114
                         8899999999987..9******8.6644333...468***************..999999**************************98766 PP

                         E..EEEEE-S CS
                  B3  90 felvvkvfrk 99 
                         f   vk++++
  Phvul.009G169300.5 115 F--DVKIYDT 122
                         6..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-1928125IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.63E-1928125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.01230123IPR003340B3 DNA binding domain
CDDcd100175.15E-1431121No hitNo description
SMARTSM010191.9E-832123IPR003340B3 DNA binding domain
PfamPF023625.1E-1232121IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MGGEEQGVSV CAACFHNCLL FHPTKPTSPT SFFKFITRQD YLTTLCIPPA FSSIVANMVN  60
KKINLNDSSG QQWKVKVSEV NGSFVFGEGW SSFSLGLGLK VGYLLVFNYI KDLHFDVKIY  120
DTSACEKLGF SKKRDQKKRS RGKIVSPVRD GILVRQEPNA PKMKRQCSEV DLDLPQNSKE  180
SGQLMHISDH CEDPCYSKRQ EFDQSHGDDG TMKIENGDLN VSNVDYESNI FEKDAMTCSK  240
DTMFEGKFST EVALDISELE KSGRSVSLGE AETSTYGKTS NLKFEENKAI LSNMEAQECQ  300
FSKGLGEMKK LPEDMTPNLD SSMDELNLTG EVSKQLKKEL VTLVELEATG LPTEIKGLLD  360
SDIFNEDNAR HSKTTHLSCV VPHDNVCLVQ Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G169300.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007137960.10.0hypothetical protein PHAVU_009G169300g
TrEMBLV7AWK00.0V7AWK0_PHAVU; Uncharacterized protein
STRINGXP_007137956.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.16e-09B3 family protein