PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.009G186900.1

Common Name

PHAVU_009G186900g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

Nin-like

Protein Properties

Length: 215aa MW: 25154.7 Da PI: 8.8589

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.009G186900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.8	7.1e-26	82	130	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +s +++s+yF++pi +AAkeL+v+lT LK++CR++GI+RWPhRk+ sl Phvul.009G186900.1 82 MLSRKTVSQYFYMPISQAAKELNVGLTHLKKRCRELGIQRWPHRKLMSL 130 58999*****************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.655	66	151	IPR003035	RWP-RK domain
Pfam	PF02042	7.4E-22	83	130	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MNCYYPHDIL FETFPLEPAP LSFHDYDFSD VKNVLSAWKE VDCSDHKPAF SSSNDGESVN 60 AMREEMKGKH RREERISNSA RMLSRKTVSQ YFYMPISQAA KELNVGLTHL KKRCRELGIQ 120 RWPHRKLMSL QTLIRNMQEQ GQGEGPQNDE KIRTAIEMLE KEKSLVEERP DLELEDKTRR 180 LRQACFKANY KKRKLMGMRF MEPQSSLDGL SDKY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.009G186900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	1e-128	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007138178.1	1e-161	hypothetical protein PHAVU_009G186900g
TrEMBL	V7AX13	1e-160	V7AX13_PHAVU; Uncharacterized protein
STRING	XP_007138178.1	1e-160	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6184	30	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	2e-54	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Phvul.009G186900.1
Entrez Gene	18620595