PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G190200.1
Common NamePHAVU_009G190200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HD-ZIP
Protein Properties Length: 322aa    MW: 36414.2 Da    PI: 4.5973
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G190200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.33e-1984137356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k+++++ eq++ Le+ F +++++  e++ +LAk+lgL+ rqV +WFqNrRa++k
  Phvul.009G190200.1  84 KKRRLSVEQVQFLEKSFDEENKLEPERKIRLAKELGLQPRQVAIWFQNRRARWK 137
                         56689************************************************9 PP
2HD-ZIP_I/II131.14.2e-4283175193
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         ekkrrls eqv++LE+sF+ee+kLeperK +la+eLglqprqva+WFqnrRAR+ktkq+Ekdy++L+++yd lk++ + L +e+++L++e+
  Phvul.009G190200.1  83 EKKRRLSVEQVQFLEKSFDEENKLEPERKIRLAKELGLQPRQVAIWFQNRRARWKTKQMEKDYDSLQACYDDLKTNYDDLLREKDKLKAEV 173
                         69**************************************************************************************999 PP

         HD-ZIP_I/II  92 ke 93 
                         ++
  Phvul.009G190200.1 174 AK 175
                         76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.55E-2070141IPR009057Homeodomain-like
PROSITE profilePS5007117.57279139IPR001356Homeobox domain
SMARTSM003891.2E-1982143IPR001356Homeobox domain
PfamPF000461.5E-1684137IPR001356Homeobox domain
CDDcd000867.17E-1984140No hitNo description
Gene3DG3DSA:1.10.10.603.8E-2086147IPR009057Homeodomain-like
PRINTSPR000311.9E-5110119IPR000047Helix-turn-helix motif
PROSITE patternPS000270114137IPR017970Homeobox, conserved site
PRINTSPR000311.9E-5119135IPR000047Helix-turn-helix motif
PfamPF021831.1E-15139180IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MVGGTVFSAA SNLTTLLSNQ TPPSASQSID SLFHSSSSSP FFGSRSIVSF GDVQGGKGCN  60
ESFFLPYDDN GDEDTDEYFH QPEKKRRLSV EQVQFLEKSF DEENKLEPER KIRLAKELGL  120
QPRQVAIWFQ NRRARWKTKQ MEKDYDSLQA CYDDLKTNYD DLLREKDKLK AEVAKLTEKV  180
LGREKMEKEN FGKAETKGYF QEPVQKSMID SASEGEGSKV SIVACKREDI SSAKSEMFDS  240
SESPRYTDGV HSALLETGDS SYVFEPDHSD VSQDEGDNLS MTLLPHYMFP KLEDVGYSDR  300
PHSSCHFGIP EEDQAIWSWS Y*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131139RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G190200.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007138213.10.0hypothetical protein PHAVU_009G190200g
TrEMBLV7AX380.0V7AX38_PHAVU; Uncharacterized protein
STRINGXP_007138213.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-47homeobox 1