PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G195200.1
Common NamePHAVU_009G195200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 475aa    MW: 52008.2 Da    PI: 8.138
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G195200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.33.7e-24163219259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +DgynWrKYGqK+vk+ + +rsYYrCt+++C++kk ++ +++ ++v+ei+Y+++H h+
  Phvul.009G195200.1 163 SDGYNWRKYGQKQVKSPTGSRSYYRCTHSNCCAKK-IKFCDHSGHVIEIVYKSQHSHD 219
                         7********************************98.999999***************7 PP
2WRKY92.92.4e-29336393259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vkgs++ r+YYrCtsagCpv+k++e++ +++k+++itY+g H+h+
  Phvul.009G195200.1 336 SDGYRWRKYGQKLVKGSPHFRNYYRCTSAGCPVRKHIETAVDNTKALIITYKGVHDHD 393
                         7********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.8E-21156221IPR003657WRKY domain
PROSITE profilePS5081117.442157221IPR003657WRKY domain
SuperFamilySSF1182903.92E-20158221IPR003657WRKY domain
SMARTSM007741.8E-22162220IPR003657WRKY domain
PfamPF031063.9E-17164219IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-30320395IPR003657WRKY domain
SuperFamilySSF1182907.32E-26330395IPR003657WRKY domain
PROSITE profilePS5081130.607330395IPR003657WRKY domain
SMARTSM007744.5E-33335394IPR003657WRKY domain
PfamPF031061.3E-22337392IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MEEEEATQQR LTDSSLTTHS LTSTASDEEL LHSETLLLHS SDLPHHNAAP DMQRSSTARE  60
IGLDESKESA QHSDEETIVK ETVEAPQKQT ENQLQMSVCS TSLSKLSPTS VSQYLSSAPG  120
PIVPEQRPSP PKANNVKVAK VDKGSPSGGT TLSSVSVTRA SASDGYNWRK YGQKQVKSPT  180
GSRSYYRCTH SNCCAKKIKF CDHSGHVIEI VYKSQHSHDP PHKIDSTKEC KFLPYSEPKM  240
KCSVPKQSSR VRNDSDPSSS PKEPLYESPC SAKRNLENSS NGEKGKVFLK EAHVNDPEPK  300
KRLNKGDDLT CLDSAIKPGK KPKFVVHAAE DMGISSDGYR WRKYGQKLVK GSPHFRNYYR  360
CTSAGCPVRK HIETAVDNTK ALIITYKGVH DHDMPVPKKR HGPPSASLVA AAAPASMNNL  420
QLKRTGLIQN QEISAQCSED TEGELTGEAL DLEGEKAIES ARTLLSIGFE IKPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-26323395274WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G195200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312380.0KT031238.1 Glycine max clone HN_CCL_32 WRKY transcription factor (Glyma12g23950.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007138279.10.0hypothetical protein PHAVU_009G195200g
SwissprotP595831e-118WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLV7B0790.0V7B079_PHAVU; Uncharacterized protein
STRINGXP_007138279.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51983456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-108WRKY DNA-binding protein 32