PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G228000.1
Common NamePHAVU_009G228000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRF
Protein Properties Length: 358aa    MW: 40403.8 Da    PI: 8.3936
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G228000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.99.9e-2577120144
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                         d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e
  Phvul.009G228000.1  77 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 120
                         79***************************************987 PP
2QLQ56.96.4e-20943236
                 QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                        +FT++Q+q+L++Q+l+yKy+a++  +Pp+Ll+ i+
  Phvul.009G228000.1  9 PFTPSQWQELEHQALIYKYMASGISIPPDLLFTIK 43
                        8******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.3E-11844IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.4E-15942IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.36944IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.9877121IPR014977WRC domain
PfamPF088791.2E-2078120IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MMNGRNRFPF TPSQWQELEH QALIYKYMAS GISIPPDLLF TIKRSYFDSP LSSRLLPNQP  60
QHFGWNYLQM GLGRKIDPEP GRCRRTDGKK WRCSKEAYPD SKYCERHMHR GKNRSRKPVE  120
VLKTTPTTNT NASTQQPISS ITKLNTVNTL SPLASSETHQ HHPPHYASFL YQHPPSRSSG  180
IGLSFEDNSA PLFLDTGSCS QSNTDCRSRY AYGEKEEVDE HAFFTEPCGI MKSFSASSMD  240
DSWQLTPLTM SSSSSSNKQR SSFGLSNDYS CLQLQSHSKQ QEQQDQGGCY MLGGGGHLGK  300
EEPQKTVHRF FDEWPHKGRQ GSWLDLDDKS STTQLSISIP TSSHDFPAFS SRTHRDG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G228000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007138669.10.0hypothetical protein PHAVU_009G228000g
TrEMBLV7B1C90.0V7B1C9_PHAVU; Uncharacterized protein
STRINGXP_007138669.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40433459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-54growth-regulating factor 5