PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G233400.1
Common NamePHAVU_009G233400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HD-ZIP
Protein Properties Length: 234aa    MW: 26452.5 Da    PI: 9.928
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G233400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-1887141256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ ++tkeq  +Le+ F+ + +++ ++++ LA+kl+L+ rqV vWFqNrRa+ k
  Phvul.009G233400.1  87 RKKLKLTKEQSATLEDIFKLHTTLNPAQKQALAEKLNLKHRQVEVWFQNRRARTK 141
                         788899***********************************************98 PP
2HD-ZIP_I/II114.46.9e-3787176190
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                         +kk++l+keq+++LE+ F+ +++L+p +K++la++L+l+ rqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en rL+ke +eLr++
  Phvul.009G233400.1  87 RKKLKLTKEQSATLEDIFKLHTTLNPAQKQALAEKLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEKLTDENLRLKKELQELRAQ 176
                         69*************************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-1770141IPR009057Homeodomain-like
SuperFamilySSF466891.41E-1872144IPR009057Homeodomain-like
PROSITE profilePS5007116.89283143IPR001356Homeobox domain
SMARTSM003893.5E-1585147IPR001356Homeobox domain
PfamPF000464.8E-1687141IPR001356Homeobox domain
CDDcd000863.37E-1487144No hitNo description
PROSITE patternPS000270118141IPR017970Homeobox, conserved site
SMARTSM003404.6E-21143186IPR003106Leucine zipper, homeobox-associated
PfamPF021833.7E-9143176IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MEDDEPCITT LSLGLGMGGH VPKKDKQKQK LPSLDLTFDI CPRREQMIHV DHQQQLHDDK  60
AKGLLCLKHP NENNSPESSN NSNNGTRKKL KLTKEQSATL EDIFKLHTTL NPAQKQALAE  120
KLNLKHRQVE VWFQNRRART KLKQTEVDCE FLKKCCEKLT DENLRLKKEL QELRAQKVGP  180
KPLYIQLSKA TTLSICSSCE KELKPKEGKK GGITDVVRNS SHKLQNSVGV KGI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135143RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G233400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311721e-164KT031172.1 Glycine max clone HN_CCL_117 homeodomain/HOMEOBOX transcription factor (Glyma15g18320.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007138743.11e-170hypothetical protein PHAVU_009G233400g
SwissprotA2XE762e-50HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotP466023e-50HAT3_ARATH; Homeobox-leucine zipper protein HAT3
SwissprotQ8GRL42e-50HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLV7AYM11e-169V7AYM1_PHAVU; Uncharacterized protein
STRINGXP_007138743.11e-169(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.14e-51HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]