PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G235700.1
Common NamePHAVU_009G235700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 245aa    MW: 27701.5 Da    PI: 5.0938
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G235700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.79.9e-145395754
                        HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                          Er+RR+++N++++ Lr+++P+ +      K++Ka+i + A+eYI++L
  Phvul.009G235700.1 53 VSERNRRKKLNERLFALRSVVPNiS------KMDKASIIKDAIEYIQEL 95
                        57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.854695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1747111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.89E-1349100No hitNo description
SMARTSM003531.1E-1452101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-1752111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-115395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MENIEEYKHY WETTMFLQTQ DLDSWGFDEA LSGYYDSSSP DGAASSAASK NIVSERNRRK  60
KLNERLFALR SVVPNISKMD KASIIKDAIE YIQELHEKEK IIQAEIMDLE SGMPKKSSSS  120
YDDFEQEQLP AVLRSKKKRT AQIYDSVSSR NTPIEVLDLS VTYMGEKTAV VSLTCSKRTD  180
TMVKLCEVFE SLKLKIITAN ITSFSGKLQK TVFIEANEEE KYHLEIKIQT AIAALNEPLS  240
PMSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-1451105961Transcription factor MYC2
5gnj_B4e-1451105961Transcription factor MYC2
5gnj_E4e-1451105961Transcription factor MYC2
5gnj_F4e-1451105961Transcription factor MYC2
5gnj_G4e-1451105961Transcription factor MYC2
5gnj_I4e-1451105961Transcription factor MYC2
5gnj_M4e-1451105961Transcription factor MYC2
5gnj_N4e-1451105961Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G235700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0966900.0BT096690.1 Soybean clone JCVI-FLGm-21E7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007138769.11e-180hypothetical protein PHAVU_009G235700g
SwissprotQ2HIV93e-94BH035_ARATH; Transcription factor bHLH35
TrEMBLV7B1M21e-179V7B1M2_PHAVU; Uncharacterized protein
STRINGXP_007138769.11e-180(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.15e-87bHLH family protein