PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G240900.1
Common NamePHAVU_009G240900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 121aa    MW: 13331.8 Da    PI: 5.3453
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G240900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.4e-191262255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr ++ +g++ AeIrdp++      r +lg+f+taeeAa+a+++a+ +l+g
  Phvul.009G240900.1 12 KYRGVRKRP-WGKFGAEIRDPKKpT---GRQWLGTFDTAEEAARAYDRAAIELRG 62
                        8********.**********97644...688**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.4E-121262IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-301271IPR001471AP2/ERF domain
CDDcd000188.63E-301272No hitNo description
SMARTSM003803.6E-351276IPR001471AP2/ERF domain
PROSITE profilePS5103223.6041270IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-221271IPR016177DNA-binding domain
PRINTSPR003676.6E-111324IPR001471AP2/ERF domain
PRINTSPR003676.6E-113652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MEEKEKGGEE VKYRGVRKRP WGKFGAEIRD PKKPTGRQWL GTFDTAEEAA RAYDRAAIEL  60
RGGLAILNFP HASASSSTTA IGTSSSSSSS QQKEVIEFEC LDDKVLEDLL ESEVKRRNPD  120
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-3071059114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G240900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-103AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007138830.12e-83hypothetical protein PHAVU_009G240900g
SwissprotQ9LTC55e-38ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLV7AZ434e-82V7AZ43_PHAVU; Uncharacterized protein
STRINGXP_007138830.17e-83(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-26ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]