PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.009G254500.2

Common Name

PHAVU_009G254500g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

CAMTA

Protein Properties

Length: 869aa MW: 98413.3 Da PI: 7.4701

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.009G254500.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	161.5	1.5e-50	31	146	3	118
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 + k+rwl+++ei+a+L n++ +++ +++ + p+sg+++L++rk++r+frkDG++wkkk dgktv+E+he+LKvg+ e +++yYah+ +npt Phvul.009G254500.2 31 EAKSRWLRPNEIHAMLSNHKYFKINAKPVHLPESGTIVLFDRKMLRNFRKDGHNWKKKSDGKTVKEAHEHLKVGNEERIHVYYAHGLDNPT 121 459************************************************************************************** PP CG-1 94 fqrrcywlLeeelekivlvhylevk 118 f rrcywlL+++le+ivlvhy+e+k Phvul.009G254500.2 122 FVRRCYWLLDKSLEHIVLVHYRETK 146 ********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	73.969	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	6.8E-72	29	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	5.3E-45	31	144	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	1.9E-6	292	407	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	9.62E-16	318	405	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	6.68E-17	493	616	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	1.7E-6	496	583	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.2E-14	503	616	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.10E-14	503	613	No hit	No description
PROSITE profile	PS50297	14.69	521	586	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	2.9E-5	554	583	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.114	554	586	IPR002110	Ankyrin repeat
SMART	SM00248	2100	593	624	IPR002110	Ankyrin repeat
SMART	SM00015	5.0E-4	740	762	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.127	741	765	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	3.6E-4	742	762	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	11	817	839	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.078	819	847	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 869 aa Download sequence Send to blast
MAHDLTGQLV SSEIHGFHTL QDLEVTNTME EAKSRWLRPN EIHAMLSNHK YFKINAKPVH 60 LPESGTIVLF DRKMLRNFRK DGHNWKKKSD GKTVKEAHEH LKVGNEERIH VYYAHGLDNP 120 TFVRRCYWLL DKSLEHIVLV HYRETKEIQL QSSPVTPVNS NSNSSSVSDP AASWIPSEDL 180 DSGTKSDYSP ELNVNLTVRS YEQKLHEINT LEWDDLVVSN ANTSTTSSGG NVPRSNNQNQ 240 SLLSGNFGNA SSTPSAEVPS LGLQSQDSFG MWMNNIISDK PCSMDESALE TSISSVHEPY 300 SSLVADNQLS SLPDQVFNLT EVSPAWASST EKTKVLVTGY FHSNYQHLAK LNLVCVCGDV 360 SFPVEIVQVG VYRCWVPPHS PGLVNIYLSF DGHKPISHVV NFEYRTPILH DPTAAMEEKY 420 NWNEFRLQMR LAHLLFSTDK TLDIFSSVVS PNAVKEARRF SFKTSFISKS WQYLLKSIDD 480 KTTPFSQVKD SLFEIALKNK LKEWLLERII VGCKSTEYDA QGQGVIHLCA VLGYDWAITL 540 FSWSGLSLDF RDKFGWTALH WAAYYGMEKM VATLLSAGAR PNVVTDPTPQ NPGGCTAADL 600 AFMNGFDGLA AYLSEKSLVE QFNDMSLAGN LSGTLETALT DPVNTEDLTE DQMYLKDTLA 660 AYRVAAGAAA RIQAAYREHS LNLKYKAVEF SSPEDQARHI VAAMRIQHAF RKYETRRSNA 720 AAVRIQHRFL TRKHRREFLN MRRQAIKIQA AFRGFQVRRQ YKKIIWSVGV LEKAILRWRL 780 KRKGFRGLQV NSAEDGKQEE GAEEDFFRTG LKQAEERVER SVVRVQAMFR SKKAQEEYRR 840 MKLAYSQAKL DLEVEDFISS EVDLLSDI*

Sequence ? help Back to Top

Protein Sequence Length: 869 aa Download sequence Send to blast

MAHDLTGQLV SSEIHGFHTL QDLEVTNTME EAKSRWLRPN EIHAMLSNHK YFKINAKPVH  60
LPESGTIVLF DRKMLRNFRK DGHNWKKKSD GKTVKEAHEH LKVGNEERIH VYYAHGLDNP  120
TFVRRCYWLL DKSLEHIVLV HYRETKEIQL QSSPVTPVNS NSNSSSVSDP AASWIPSEDL  180
DSGTKSDYSP ELNVNLTVRS YEQKLHEINT LEWDDLVVSN ANTSTTSSGG NVPRSNNQNQ  240
SLLSGNFGNA SSTPSAEVPS LGLQSQDSFG MWMNNIISDK PCSMDESALE TSISSVHEPY  300
SSLVADNQLS SLPDQVFNLT EVSPAWASST EKTKVLVTGY FHSNYQHLAK LNLVCVCGDV  360
SFPVEIVQVG VYRCWVPPHS PGLVNIYLSF DGHKPISHVV NFEYRTPILH DPTAAMEEKY  420
NWNEFRLQMR LAHLLFSTDK TLDIFSSVVS PNAVKEARRF SFKTSFISKS WQYLLKSIDD  480
KTTPFSQVKD SLFEIALKNK LKEWLLERII VGCKSTEYDA QGQGVIHLCA VLGYDWAITL  540
FSWSGLSLDF RDKFGWTALH WAAYYGMEKM VATLLSAGAR PNVVTDPTPQ NPGGCTAADL  600
AFMNGFDGLA AYLSEKSLVE QFNDMSLAGN LSGTLETALT DPVNTEDLTE DQMYLKDTLA  660
AYRVAAGAAA RIQAAYREHS LNLKYKAVEF SSPEDQARHI VAAMRIQHAF RKYETRRSNA  720
AAVRIQHRFL TRKHRREFLN MRRQAIKIQA AFRGFQVRRQ YKKIIWSVGV LEKAILRWRL  780
KRKGFRGLQV NSAEDGKQEE GAEEDFFRTG LKQAEERVER SVVRVQAMFR SKKAQEEYRR  840
MKLAYSQAKL DLEVEDFISS EVDLLSDI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.009G254500.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007138977.1	0.0	hypothetical protein PHAVU_009G254500g
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	V7B3E1	0.0	V7B3E1_PHAVU; Uncharacterized protein
STRING	XP_007138978.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16940.1	0.0	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	Phvul.009G254500.2
Entrez Gene	18621293

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]