PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G260100.1
Common NamePHAVU_009G260100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 445aa    MW: 49719.7 Da    PI: 7.3273
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G260100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B31016.8e-32112216199
                         EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.g 86 
                         f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g++W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g
  Phvul.009G260100.1 112 FEKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDRNGKVWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDTVSFQRGlG 202
                         99****************************66677899*************************************************7668 PP

                         S.SEE..EEEEE-S CS
                  B3  87 r.sefelvvkvfrk 99 
                         +  + +l++ ++r+
  Phvul.009G260100.1 203 DmYRHRLYIDWRRR 216
                         88889999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-41103220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-30110215IPR015300DNA-binding pseudobarrel domain
CDDcd100171.59E-26111199No hitNo description
PfamPF023621.8E-29112216IPR003340B3 DNA binding domain
PROSITE profilePS5086314.494112217IPR003340B3 DNA binding domain
SMARTSM010191.9E-23112217IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MDLIQQVKGN YSDSREEEEE EEVAEIMGIT REAESSRLHH QDAASNFGKK LDLMELSLGS  60
TKEEERERNL QHHQHHHQHP QQQQHEHHQQ HHHEGPGTCS NAKEAVEKEQ MFEKVVTPSD  120
VGKLNRLVIP KQHAEKYFPL DSSSNEKGLL LNFEDRNGKV WRFRYSYWNS SQSYVMTKGW  180
SRFVKEKKLD AGDTVSFQRG LGDMYRHRLY IDWRRRTDHA HPPSDPSASP LFLPSIRWYS  240
LPATSPIAPP RYHHDHHFHH LNYSNLFTFQ HQHQYLGHVH GAAATAASHH HNNYGEHNSG  300
SGPGSLYYLR SMGGGGDQNM GGRGNSIVPM IIDSVPVNVG HHNHRHGHGG MASGGGSATT  360
SSGKRLRLFG VNMECASSAE DSRSLSLGSG GHVTVGNSLP SSSSSLQQRL RIPHEDPLSS  420
SARFGDHKGG SGTSLLFDLD PSLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-611072163113B3 domain-containing transcription factor NGA1
5os9_B5e-611072163113B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G260100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007139042.10.0hypothetical protein PHAVU_009G260100g
SwissprotO827992e-73NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLV7B3K40.0V7B3K4_PHAVU; Uncharacterized protein
STRINGXP_007139042.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-65B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]