PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G011900.1
Common NamePHAVU_010G011900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TALE
Protein Properties Length: 601aa    MW: 66159.9 Da    PI: 6.9216
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G011900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.71.1e-094044411954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +++  LAk++gL+ +qV++WF N R +
  Phvul.010G011900.1 404 FEHflHPYPTDTDKIMLAKQTGLSRSQVSNWFINARVR 441
                         554459******************************88 PP
2BELL100.71.1e-32277344572
                BELL   5 lqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                           +kk++Ll++l+eV++rY+qy++q++ v+ sFe v gl +a+pY+slA ka+S+hFrcLk+ai++q+
  Phvul.010G011900.1 277 QGRKKSRLLTMLDEVYRRYRQYYQQMHEVVTSFEYVSGLSNAAPYASLAIKAMSKHFRCLKNAITDQL 344
                         678**************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.6E-44214342IPR006563POX domain
PfamPF075262.3E-37219341IPR006563POX domain
PROSITE profilePS5007112.098382445IPR001356Homeobox domain
CDDcd000862.34E-13385446No hitNo description
SMARTSM003891.5E-10385449IPR001356Homeobox domain
SuperFamilySSF466892.95E-17387452IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-28388449IPR009057Homeodomain-like
PfamPF059204.6E-19402441IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MAEGFEAYHV PQQSRRDKLR VVVTQNQHGL VEPSTLLPLY DPSSFISSEL LTSFHNTHKH  60
NLGCGVKEER ANLMMGFGGG GVINNGSSSS SCCSSNSSSV SYLDPESSLP LNQATIQVIN  120
NNNNNNMFLY QAQNLGEFDQ GYNNNNNGSE IMVFKPEPLS LSLSSHNNGV NLQRYGSVVY  180
GDKVGGVGGG GCVAYGGSGL NEVSRCTVPM GPFTGYASIL KGSRFLKPAQ QLLEELCDVG  240
GVCAENMVAD ASLMEPIPLP PPQSSSEDLL GDQGGDQGRK KSRLLTMLDE VYRRYRQYYQ  300
QMHEVVTSFE YVSGLSNAAP YASLAIKAMS KHFRCLKNAI TDQLQFANKA HFHISNRKDE  360
SSRFGNSDRG PYSQRPGFLE HQPVWRPQRG LPERAVTVLR AWLFEHFLHP YPTDTDKIML  420
AKQTGLSRSQ VSNWFINARV RLWKPMVEEI HMLETRQVHK NSQKEEHCRN KSSDQLPSDN  480
SIVSENPSGS TEKFQDAPYK RATEELPNIS VRTQEQLNLA CTNNQPGGVG VNMGGSASNS  540
VSLTLGLYQN HGIGLAEPFT LNAAQRFGVA LETNNEGYVM SGYESQNRHF GGQLLHDFVG  600
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A2e-16391449563Homeobox protein Meis2
4xrm_B2e-16391449563Homeobox protein Meis2
4xrs_A2e-16391448158Homeobox protein Meis1
4xrs_B2e-16391448158Homeobox protein Meis1
5bng_A2e-16391449159Homeobox protein Meis2
5bng_B2e-16391449159Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G011900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007134014.10.0hypothetical protein PHAVU_010G011900g
SwissprotQ9LZM81e-115BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLV7AMB70.0V7AMB7_PHAVU; Uncharacterized protein
STRINGXP_007134014.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-105TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]