PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G012500.1
Common NamePHAVU_010G012500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 563aa    MW: 62823.2 Da    PI: 9.7385
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G012500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73.1e-1458103248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         + WT+ Ede l++av+ + g++Wk+Ia+ ++  +++ qc +rw k+l
  Phvul.010G012500.1  58 DGWTEKEDETLKNAVEVFNGKNWKKIAAFFP-DKSEVQCLHRWKKVL 103
                         56*****************************.************986 PP
2Myb_DNA-binding50.45.1e-16109155148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT+eEd+++v++v  +G+  W+ I++ ++ gR +kqc++rw ++l
  Phvul.010G012500.1 109 KGHWTKEEDDKIVELVCIHGPSKWSFISKSLP-GRIGKQCRERWCNHL 155
                         789*****************************.*************96 PP
3Myb_DNA-binding50.64.4e-16161203145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         +++WT eE++ l +a+  +G++ W+ Ia+ ++ gRt++ +k++w+
  Phvul.010G012500.1 161 KDPWTLEEELALMKAHCIHGNK-WAEIAKVLP-GRTDNAIKNHWN 203
                         689*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.15452103IPR017930Myb domain
SuperFamilySSF466894.67E-1455110IPR009057Homeodomain-like
SMARTSM007171.1E-1256105IPR001005SANT/Myb domain
PfamPF002491.6E-1259103IPR001005SANT/Myb domain
CDDcd001676.17E-1260103No hitNo description
Gene3DG3DSA:1.10.10.603.3E-1960115IPR009057Homeodomain-like
PROSITE profilePS5129426.608104159IPR017930Myb domain
SuperFamilySSF466892.6E-30106202IPR009057Homeodomain-like
SMARTSM007171.8E-12108157IPR001005SANT/Myb domain
CDDcd001671.64E-12112155No hitNo description
PfamPF139215.1E-16112170No hitNo description
Gene3DG3DSA:1.10.10.601.8E-24116162IPR009057Homeodomain-like
PROSITE profilePS5129421.173160210IPR017930Myb domain
SMARTSM007171.5E-14160208IPR001005SANT/Myb domain
CDDcd001677.22E-11163203No hitNo description
Gene3DG3DSA:1.10.10.601.2E-21163209IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MTEEKAEQLC LKNKQTYAAS SSSISDGSGS AIPTSSRKTG SALPSNRRTT GPVRRVKDGW  60
TEKEDETLKN AVEVFNGKNW KKIAAFFPDK SEVQCLHRWK KVLNPELIKG HWTKEEDDKI  120
VELVCIHGPS KWSFISKSLP GRIGKQCRER WCNHLCPDIK KDPWTLEEEL ALMKAHCIHG  180
NKWAEIAKVL PGRTDNAIKN HWNGSLKKRK DFYLANGRLP PILKSSTEVT VKDTVTHSTT  240
NTIHVCSNKG LDATVASSSK TTDIAKLDSS DKNQLESSGI VREVEYSSSL PPKKCADSDC  300
VNCNRLFHEG LRCSNMESGS GDNFKIIKAP KFVNPGQNAN PRIDHYLNNS DMNGDRSTRI  360
FYSKESRRFG SFCYESPRLD NPHPSDSFSF NISGLQNQYF SPRMKSSVGF VTPPHVKGIE  420
SCSESLESIL RKAAKTFPTP SIIRKRRNGS ELPPTPRKLA NAVTSHVCNE EVRTNDVSSS  480
EAVRLPVSPA NHGHGSNILH NKAFNMTPLY RIRSKQTAIK SLKKQLDSAF HMEEKLASEM  540
EKSTKSVVIT EDCLHKPKLA ET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-60572096158MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-60572096158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G012500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007134020.10.0hypothetical protein PHAVU_010G012500g
TrEMBLV7AKD80.0V7AKD8_PHAVU; Uncharacterized protein
STRINGXP_007134020.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66163449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.11e-109myb domain protein 3r-3