PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G013500.1
Common NamePHAVU_010G013500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Dof
Protein Properties Length: 334aa    MW: 35595.7 Da    PI: 9.1776
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G013500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.37e-3876135362
              zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                         e alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalr vPvGgg+r+nk+s+
  Phvul.010G013500.1  76 EVALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSK 135
                         5679*****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-3159124IPR003851Zinc finger, Dof-type
PfamPF027012.6E-3278133IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.29279133IPR003851Zinc finger, Dof-type
PROSITE patternPS01361081117IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MVFTSIPASY FDAANWQQQQ PNSQGGGSGS TSRQLLPPPP QPQPPLPGAM QSHGEGSIRP  60
GSMADRARMA NMPMPEVALK CPRCESTNTK FCYFNNYSLS QPRHFCKTCR RYWTRGGALR  120
SVPVGGGCRR NKRSKGGGGS NSPASSDRQT GSVNSTNSVS SKSERIGLAP HLPPLRFMPP  180
LHQFAEFGDA DIGLNYGLSY GPVGGVGDLS YQIGASAFGG ATSILSAPGL EQWRMPQQFP  240
LLASLEGSSP ASNLYPFEGN AEVSGYMRPK VSTSGIMTQL ASVKMEDGRE PNLPTHFLGN  300
NNQVSEQYWS SATSASWTDI SGFSSSSTTT NHL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G013500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007134031.10.0hypothetical protein PHAVU_010G013500g
TrEMBLV7AL920.0V7AL92_PHAVU; Uncharacterized protein
STRINGXP_007134031.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.11e-46OBF-binding protein 3