PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.010G018700.1

Common Name

PHAVU_010G018700g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

Trihelix

Protein Properties

Length: 261aa MW: 30096.1 Da PI: 7.5462

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.010G018700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.9	4.2e-16	19	102	2	81
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergf.erspkqCkekwenlnkrykkikegekkrtsessstcpy 81 Wt+qe+ +Li+a++e++ +l+rg l+ ++Weev+ ++ + + +s+ qC++k+e+l++r++++k++ + ++y Phvul.010G018700.1 19 WTHQETVHLIRAYQEKWYALKRGPLRHNQWEEVAVVVaarcgYDLAYpAKSALQCRHKMEKLRQRHRAEKKHVAAT--LRPAAWQY 102 ***********************************8666655566678******************998774..33334655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.04	18	81	IPR017877	Myb-like domain
Pfam	PF13837	4.0E-15	18	107	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MATQNDAASP TKKPQPIPWT HQETVHLIRA YQEKWYALKR GPLRHNQWEE VAVVVAARCG 60 YDLAYPAKSA LQCRHKMEKL RQRHRAEKKH VAATLRPAAW QYNALMEDLE RGPLPISALA 120 PFQNDTDSDP DEDANYQNDN DGDASFVKSK SISCILSERP VRMRSGERGF LRERVEEERG 180 EDDDDDRDDV LALPAEIRAF AERFIGMESL KMEMMKETER CRLEMEKKRI QMILDSQRRI 240 VDSIGRAFGS NKRIKITQQI *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.010G018700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	0.0	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007134090.1	0.0	hypothetical protein PHAVU_010G018700g
Refseq	XP_007134091.1	0.0	hypothetical protein PHAVU_010G018700g
TrEMBL	V7AKK1	0.0	V7AKK1_PHAVU; Uncharacterized protein
STRING	XP_007134090.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10087	28	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	3e-35	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Phvul.010G018700.1
Entrez Gene	18617138