PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G043200.1
Common NamePHAVU_010G043200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 242aa    MW: 26835.5 Da    PI: 9.0424
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G043200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.6e-1366113355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + h ++Er+RR++i + + eL  ++P +     kKl+K +i  k+++Y+k+Lq
  Phvul.010G043200.1  66 QQHIMAERKRREKISTLLVELSAMVPGL-----KKLDKLSIIGKTIDYVKYLQ 113
                         5799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.09E-1660126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.21863112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-1166113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-1867127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.39E-1268117No hitNo description
SMARTSM003533.9E-1369118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
DFANSSSNNN GSCLERNTQH ANSNSEKNQV VSSCNLSFED STVVSNVPDK SFHEKPLKGR  60
SSSLSQQHIM AERKRREKIS TLLVELSAMV PGLKKLDKLS IIGKTIDYVK YLQNRVKDLQ  120
EQHSKMESID CCRNNKSNVK ISQNSNNGLD DRLTFPKVDA SVSGKDVIIR VTCEKREHIV  180
TKLLSMLASH NLSVVCSSVL PFGTSTLNIS IIAKAQHFGM AIDDLVKNLS EDLLKLYNLQ  240
Q*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17176ERKRRE
27277RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G043200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007134383.11e-176hypothetical protein PHAVU_010G043200g, partial
TrEMBLV7ALB31e-174V7ALB3_PHAVU; Uncharacterized protein (Fragment)
STRINGXP_007134383.11e-175(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1824835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.13e-37bHLH family protein