PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G043300.1
Common NamePHAVU_010G043300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 287aa    MW: 32264.4 Da    PI: 5.8347
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G043300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438e-14111158355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + h ++Er+RR++i + + eL  ++P +     kKl+K +i+ k+v+Y+k+Lq
  Phvul.010G043300.1 111 QQHIMAERKRREKISTLLVELSAMVPGL-----KKLDKLSIVGKTVDYVKYLQ 158
                         5799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148108157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-11111158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-16111170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-17112171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.70E-13113162No hitNo description
SMARTSM003532.4E-13114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
TMDETWEKWF SDLEMDDELH MFNEHNMNTL EEELMKVVSS VPCDSDFANS SSNNNGSCLE  60
RNTQHANSNS EKNQVVSSCN LSFEDSTVVS NVPDKSFHEK PLKGRSSSLS QQHIMAERKR  120
REKISTLLVE LSAMVPGLKK LDKLSIVGKT VDYVKYLQNR VKDLQEQHSK IEYAECCRNN  180
KSNVNISENS NNGLDDRLTF PKVNVSVSGE DVIIRVTCEK REHIVTKFLS MLASHNLSVA  240
CSSVLPFGTS TLNISIIAKA QHFGMAIDDL VKNLSEDLLK LYNLQQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116121ERKRRE
2117122RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G043300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007134384.10.0hypothetical protein PHAVU_010G043300g, partial
TrEMBLV7AP540.0V7AP54_PHAVU; Uncharacterized protein (Fragment)
STRINGXP_007134384.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1824835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.12e-36bHLH family protein