PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G052200.1
Common NamePHAVU_010G052200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HD-ZIP
Protein Properties Length: 306aa    MW: 34158.2 Da    PI: 7.505
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G052200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.27.8e-20142196256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ +++keq  +Lee F+++++++ ++++ LAk+l+L+ rqV vWFqNrRa+ k
  Phvul.010G052200.1 142 RKKLRLSKEQALVLEETFKEHNTLNPKQKQALAKQLNLSPRQVEVWFQNRRARTK 196
                         788899***********************************************98 PP
2HD-ZIP_I/II126.31.3e-40142231191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rlskeq+ +LEe+F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  Phvul.010G052200.1 142 RKKLRLSKEQALVLEETFKEHNTLNPKQKQALAKQLNLSPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELR-AL 231
                         69*************************************************************************************9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046189.8E-251113IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.602.0E-19116199IPR009057Homeodomain-like
SuperFamilySSF466896.27E-20126199IPR009057Homeodomain-like
PROSITE profilePS5007117.864138198IPR001356Homeobox domain
SMARTSM003892.5E-17140202IPR001356Homeobox domain
CDDcd000862.55E-16142199No hitNo description
PfamPF000463.4E-17142196IPR001356Homeobox domain
PROSITE patternPS000270173196IPR017970Homeobox, conserved site
PfamPF021836.7E-12198232IPR003106Leucine zipper, homeobox-associated
SMARTSM003407.8E-27198241IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGEKDDGLGL RLSLRWGEND DNNMNQQHPF NMHKPPQPVP NQRTSFNNLF HFHGASHVTN  60
RNSEPPPFFF GIDVNLPPPP TPTPSVVPCE EDNLVSSQNS AVSSISGKRS EREENERGSC  120
SHGSEDEDGG GFGGEGDGDM SRKKLRLSKE QALVLEETFK EHNTLNPKQK QALAKQLNLS  180
PRQVEVWFQN RRARTKLKQT EVDCEYLKRC CENLTEENRR LQKEVQELRA LKFSPQLYMH  240
MNPPTTLTMC PSCERVAVSS ASSSSSAAMP SVPPPANHNP LGPTIQRPVP VNPWAAMSIQ  300
RPCRN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140146SRKKLRL
2190198RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G052200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-120AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007134496.10.0hypothetical protein PHAVU_010G052200g
SwissprotP466022e-89HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLV7AMJ10.0V7AMJ1_PHAVU; Uncharacterized protein
STRINGXP_007134496.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44910.18e-76homeobox-leucine zipper protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]