PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G070600.1
Common NamePHAVU_010G070600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 397aa    MW: 44725.4 Da    PI: 9.4016
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G070600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.22.3e-16240287455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn+ ErrRRd+iN+++ eL++l+P++    sk  +Ka++L ++++Y+k+Lq
  Phvul.010G070600.1 240 VHNQSERRRRDKINQRMKELQKLVPNS----SKQTDKASMLDEVIQYMKQLQ 287
                         6*************************9....789*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.746236286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-18238301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-14240287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-18240294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.15E-16241291No hitNo description
SMARTSM003533.3E-17242292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MWTTTPFPHP QSSLFFPPPI SQPMKSQSKF LLKFHSFYSS KLCHLLLLIV EDEFFELYYR  60
LVYKGACKKG QPLTPEDSPG RNQTTWDIPR TSGTLESIVN HRIGKNCHKS VTKDALVPCF  120
PKQSTMFGAC KKGYSMRVES GAGVVARGPT THELSGGKDS NVSGSDTYPR ELSVTFNSDT  180
MGCPENTCSS GKQCTDTTAI DDRDSVSHRR SQSEAGEEDC KRSGVDRYCE SNKRIKASAV  240
HNQSERRRRD KINQRMKELQ KLVPNSSKQT DKASMLDEVI QYMKQLQAHL QMMNWMKMYS  300
SIMLPIAMQQ QQLKMSMIMT QMGIGMRMSK EMTMNMNNIN IPSIPPMLHL PPFMPVASCA  360
DQLLGEPPKS VTVDAYSKMA ALYNQMYHSP YSTSKK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244249ERRRRD
2245250RRRRDK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G070600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007134726.10.0hypothetical protein PHAVU_010G070600g
SwissprotQ8GZ383e-36UNE10_ARATH; Transcription factor UNE10
TrEMBLV7AN760.0V7AN76_PHAVU; Uncharacterized protein
STRINGXP_007134726.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-38bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]