PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G072700.1
Common NamePHAVU_010G072700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 653aa    MW: 73001.7 Da    PI: 6.2688
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G072700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS322.68.2e-992966513374
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         ++L++ Ae +++g+   aq +Larl+++ sp g+p+qR+a+y++eAL + l++      +a ++ + s+ +s+ ++ a+k fse+sP+++f
  Phvul.010G072700.1 296 DQLYKTAELIEAGNPVHAQGILARLNHQLSPIGKPFQRAAFYMKEALMSLLHS------NAHNVLAFSPISSIFKIGAYKSFSEISPVIQF 380
                         689*************************************************9......4555555555559******************* PP

                GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                         +++t NqaI ea+e+ +r+HiiDfdi+ G+QW +++qaLa R++g psl+iT+++sp + ++ el+ t+e+L+++A+ + ++fefnvl ++
  Phvul.010G072700.1 381 ANFTSNQAIIEALERFDRIHIIDFDIGFGVQWSSFMQALAMRSNGVPSLKITAIVSPLTYDEFELNVTQEKLNQYAKDISMSFEFNVLSTE 471
                         **********************************************************99***************************8555 PP

                GRAS 185 rledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                         +l++     L+v+   +Ea+aVn+ l+ ++ +      +   + vL++vk+l+Pkvvv  ++++d  +++F + +++al+ ysal++sl+a
  Phvul.010G072700.1 472 SLNTS-SCPLSVQYydNEATAVNMPLSCFTNY------PTLFPLVLRFVKQLRPKVVVTLDRNCDQLDAPFSTNIVHALHSYSALLESLDA 555
                         44444.4455555555**********999988......334468*********************************************77 PP

                GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                             + +  +k+E++++ +++++ ++   ++    +e+l +Wr+++ + GF+p ++s+++++qa++l++k +++g+++e ++ slvl+W++
  Phvul.010G072700.1 556 L-NVNLDVLQKIEKHFILPALKKTITVPLRS----QEKLPSWRNMFLQYGFSPFTFSNFTEAQAECLVQKAPVRGFQLERKHSSLVLCWQR 641
                         6.4566999******************9999....9******************************************************* PP

                GRAS 365 rpLvsvSaWr 374
                         ++L++vS Wr
  Phvul.010G072700.1 642 KELITVSTWR 651
                         *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.025268631IPR005202Transcription factor GRAS
PfamPF035142.8E-96296651IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MKAMPFPFEE FQGKGVLDFS SASDSFSFFL HHPQPKWTID KEDYCYVGST EPTSVLDSRR  60
SPNSSTMSSS LGSSNTISKG GSGGSTNNTT CYTPTLSQNP PQTSLETSTE KCGVRMEDWE  120
TQDQSILRLI MADAEDPSAG LSKLFQGSGC GSQQTVDFNA GFGVVDQGLN MQHVVGEVDE  180
KPQVINPQFE LNQTQVQFSE NPSFFVPMMY PQLQEQQVFA QHPAKRPVFE PSGHSYQAPR  240
LPLLDSGQEV FGRRQQTQLP LFPHHMQPQV VPSAKPQKAS STGEDASHQL QQAIFDQLYK  300
TAELIEAGNP VHAQGILARL NHQLSPIGKP FQRAAFYMKE ALMSLLHSNA HNVLAFSPIS  360
SIFKIGAYKS FSEISPVIQF ANFTSNQAII EALERFDRIH IIDFDIGFGV QWSSFMQALA  420
MRSNGVPSLK ITAIVSPLTY DEFELNVTQE KLNQYAKDIS MSFEFNVLST ESLNTSSCPL  480
SVQYYDNEAT AVNMPLSCFT NYPTLFPLVL RFVKQLRPKV VVTLDRNCDQ LDAPFSTNIV  540
HALHSYSALL ESLDALNVNL DVLQKIEKHF ILPALKKTIT VPLRSQEKLP SWRNMFLQYG  600
FSPFTFSNFT EAQAECLVQK APVRGFQLER KHSSLVLCWQ RKELITVSTW RC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-3930065025378Protein SCARECROW
5b3h_A9e-4030065024377Protein SCARECROW
5b3h_D9e-4030065024377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G072700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007134751.10.0hypothetical protein PHAVU_010G072700g
TrEMBLV7AN870.0V7AN87_PHAVU; Uncharacterized protein
STRINGXP_007134751.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-124GRAS family protein