PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G072900.1
Common NamePHAVU_010G072900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 725aa    MW: 79778.1 Da    PI: 6.2025
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G072900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS310.34.3e-953687233374
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         ++L++ Ae +++g+   aq +Larl+++ sp g+p+qR+a+y++eAL + l++      +a +  + s+ + + ++ a+k fse+sP+l+f
  Phvul.010G072900.1 368 DQLYKTAELIEAGNPVHAQGILARLNHQLSPIGKPFQRAAFYMKEALMSLLHS------NAHNFMAFSPISFIFKIGAYKSFSEISPVLQF 452
                         689*************************************************9......5555555555569******************* PP

                GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                         s++t+Nqa+ eave+++r+H+iDfdi+ G+QW +++q++a R+  +psl++T+++sp++ ++ el+ t+e+L ++A+ ++v+fef+vl  +
  Phvul.010G072900.1 453 SNFTCNQALIEAVERCDRIHVIDFDIGFGVQWSSFMQEIALRSTAAPSLKVTAIVSPSTCDEVELNFTKENLMQYAKDINVSFEFSVLNIE 543
                         ***************************************************************************************9888 PP

                GRAS 185 rledleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                         +l++ +     ++  +Ea+aVn+ ++ ++        +s  ++ L++vk+l+Pkvvv  ++ +d+ + s+ ++ ++ l++ysal+dsl+a 
  Phvul.010G072900.1 544 SLHSSSSPLVgQFFDNEAIAVNMPVSSFTNN------PSLFPSALHFVKQLRPKVVVTLDRICDRIDVSLPTKAVHVLQCYSALLDSLDAV 628
                         777774444456777**********666554......444457*********************************************665 PP

                GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
                            + +  +k+Er+++++  ++++   + +    +e+l  Wr+ l ++GF+p ++s+++++qa++l+++ +++g++ve +  slvl+W+++
  Phvul.010G072900.1 629 -NVNLDVLQKIERHFIQPVMKKIILGHHHS----QEKLPPWRNLLLQSGFSPSTFSNFTEAQAECLVQRAPVRGFHVERKPSSLVLCWQRK 714
                         .3466999****************999998....9******************************************************** PP

                GRAS 366 pLvsvSaWr 374
                         +L+svS Wr
  Phvul.010G072900.1 715 ELISVSTWR 723
                         ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.889340703IPR005202Transcription factor GRAS
PfamPF035141.5E-92368723IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MKAMPLPFEE FQGKGVLDFS SASDSFSLLL HHPQTKWTID KEDYCYVGST EPTSVLDSRR  60
SPSPPTSSST MSSSLGSNST SKGGSGTSAN TTTTTGAAAP TPSDNNNPPP DSSPEKCGIR  120
MEDWEGQDQS IFRLIMGDVE DPSAGLSKLL QSTACGSQSI DFNAGFGVVD QGLNMVSGGI  180
DPSGNYPAGF PFIAENIDGH NGKPGSVAGQ VSESVVFSAN NPLMVSSSVS PGVFTSQQQH  240
EFGVVDEKPQ VINPQFMLNQ NQVQFSENPS FFVPLMYPQV QEQQVFPQHQ AKRPLFESIG  300
HNYQAPRLPL LDSGQEVFGR RQQTQLPLFP HHMQQQQQQS IVMPSAKQQK VSSAGDDASH  360
QLQQAIFDQL YKTAELIEAG NPVHAQGILA RLNHQLSPIG KPFQRAAFYM KEALMSLLHS  420
NAHNFMAFSP ISFIFKIGAY KSFSEISPVL QFSNFTCNQA LIEAVERCDR IHVIDFDIGF  480
GVQWSSFMQE IALRSTAAPS LKVTAIVSPS TCDEVELNFT KENLMQYAKD INVSFEFSVL  540
NIESLHSSSS PLVGQFFDNE AIAVNMPVSS FTNNPSLFPS ALHFVKQLRP KVVVTLDRIC  600
DRIDVSLPTK AVHVLQCYSA LLDSLDAVNV NLDVLQKIER HFIQPVMKKI ILGHHHSQEK  660
LPPWRNLLLQ SGFSPSTFSN FTEAQAECLV QRAPVRGFHV ERKPSSLVLC WQRKELISVS  720
TWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-2837272224377Protein SCARECROW
5b3h_D1e-2837272224377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G072900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007134753.10.0hypothetical protein PHAVU_010G072900g
SwissprotO813161e-121SCL6_ARATH; Scarecrow-like protein 6
TrEMBLV7AMB80.0V7AMB8_PHAVU; Uncharacterized protein
STRINGXP_007134753.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-123GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]