PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G084900.1
Common NamePHAVU_010G084900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family LBD
Protein Properties Length: 213aa    MW: 23325.8 Da    PI: 8.3723
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G084900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.89.9e-40151151100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC+k+C++apyf ++q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA arardPvyG+vg++++lqqq+++l
  Phvul.010G084900.1  15 PCGACKFLRRKCVKGCIFAPYFDSDQgTAHFAAVHKVFGASNASKLLMRIPAHKRLDAVVTLCYEALARARDPVYGCVGHLFALQQQVMNL 105
                         7***********************9989*************************************************************** PP

              DUF260  91 kaelallkee 100
                         +ael +++++
  Phvul.010G084900.1 106 QAELTYVQAR 115
                         *****99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.4814116IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-3815113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MDYGGKIGGS ERGGPCGACK FLRRKCVKGC IFAPYFDSDQ GTAHFAAVHK VFGASNASKL  60
LMRIPAHKRL DAVVTLCYEA LARARDPVYG CVGHLFALQQ QVMNLQAELT YVQARLATMQ  120
RMPMAVAPLL HPQSSSPQTL PSSDQLASNV DMQSVPIMHY DPLQPHSASL ELSSILFNQS  180
DQQVEDRELQ ALAREFVTKY LPGVRFQQSN SP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-37131169111LOB family transfactor Ramosa2.1
5ly0_B4e-37131169111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G084900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-148AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007134896.11e-157hypothetical protein PHAVU_010G084900g
SwissprotO813225e-71LBD31_ARATH; LOB domain-containing protein 31
TrEMBLV7ANJ91e-156V7ANJ9_PHAVU; Uncharacterized protein
STRINGXP_007134896.11e-157(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.13e-71LOB domain-containing protein 31