PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.010G115600.1

Common Name

PHAVU_010G115600g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

Dof

Protein Properties

Length: 283aa MW: 30649.1 Da PI: 8.9957

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.010G115600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.3	9.3e-40	20	80	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknkk+s Phvul.010G115600.1 20 PQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKVS 80 6899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-28	15	78	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-33	22	78	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.124	24	78	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	26	62	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MEGMTPNSCS RLVLEKKARP QEQLNCPRCN STNTKFCYYN NYSLTQPRYF CKTCRRYWTE 60 GGSLRNVPVG GGSRKNKKVS SGAGATASSS SSPKVPDLNP PNLSVSVSAL SSQNPKIIHG 120 GQDLNLAFPA MDKYHHGISP YVEMQNSDTT THHQNSTSCS APPTTLSALE LLRSSMASRG 180 LNPYAPSSLM PNSANNNALY PSGFPMQEVK PSLSFSSVDG MGNRSYDHHV QERGGRVLFP 240 FGDVNKQLSA AGSAEVEHNK EQQQQQGNST GYWSGMIGEG TW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.010G115600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	0.0	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007135275.1	0.0	hypothetical protein PHAVU_010G115600g
Swissprot	Q9ZPY0	1e-62	DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBL	V7ANX3	0.0	V7ANX3_PHAVU; Uncharacterized protein
STRING	XP_007135275.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	1e-64	Dof family protein

Link Out ? help Back to Top
Phytozome	Phvul.010G115600.1
Entrez Gene	18618148

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]