PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G117900.1
Common NamePHAVU_010G117900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 465aa    MW: 51937.7 Da    PI: 6.5912
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G117900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.4e-12284330354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  Phvul.010G117900.1 284 MNHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVTYINEL 330
                         5899***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-4228197IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.926281330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-17282343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.69E-14284335No hitNo description
Gene3DG3DSA:4.10.280.101.0E-15285343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-10285330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-13287336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MEELIMSPSS SSSLVSQPQE NPIPTPSLQQ KLQFLLQSQP DWWVYAIFWQ ASHDDNGNLY  60
LSFGEGHFQG TKETSPKFPT PISTKKFTKT PTTENINDAE WFYVMSLTRT FTVTNSSSST  120
PPTPSSLLGK SFALGSVLWL NNKQELQFYK CDRSNEAHLH GIQTLISIPT QDGVVEMGSY  180
DSIKQNWNLV QHVKSLFQPL PDPLPVQVLN DNTISFADIG IVAGIQETKK RKQAQTPPNN  240
KKDIYVDSEH SDSDCPMLPT TTTPTASEPK KRGRKPVIGR ETPMNHVEAE RQRREKLNHR  300
FYALRAVVPN VSRMDKASLL SDAVTYINEL KAKIEYLESQ QQREGNKRVK TEMMDTMDNQ  360
STTTTTTSTI VDQSRPGAGG PCPFGLEIDV KIMGPDAMVR VQSENANHPG ARLMGALRDL  420
EFQVHHASMS CVNDLMLQDV VINVPNGMRS EEGLKSAILM RLDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-26278358183Transcription factor MYC2
5gnj_B2e-26278358183Transcription factor MYC2
5gnj_E2e-26278358183Transcription factor MYC2
5gnj_F2e-26278358183Transcription factor MYC2
5gnj_G2e-26278358183Transcription factor MYC2
5gnj_I2e-26278358183Transcription factor MYC2
5gnj_M2e-26278358183Transcription factor MYC2
5gnj_N2e-26278358183Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G117900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135301.10.0hypothetical protein PHAVU_010G117900g
TrEMBLV7APQ60.0V7APQ6_PHAVU; Uncharacterized protein
STRINGXP_007135301.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.13e-64bHLH family protein